PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV45902.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

NAC

Protein Properties

Length: 158aa MW: 18847.4 Da PI: 9.366

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV45902.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	138.3	4.9e-43	1	122	5	128
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102 +rF Pt+eel+ ++L+kk++++++e +i +v+ yk++Pw+L + + ++ewyfF++r+ ky++g+r+nra+ +gyWkat d+++ + ++e++g KZV45902.1 1 MRFAPTEEELI-CHLRKKIKNEPFED-VCICSVNFYKYNPWELTdMYPTLATDEWYFFTSREFKYPNGSRPNRAAGDGYWKATVADQKIQE-RQEVIGF 96 69*******.89*****888.67**********8444444677*********************************9.999 PP NAM 103 kktLvfykgrapkgektdWvmheyrl 128 kktLvfy+g+ap+g+kt+W+mhey+l KZV45902.1 97 KKTLVFYHGKAPNGKKTNWIMHEYTL 122 **********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.03E-47	1	146	IPR003441	NAC domain
Pfam	PF02365	1.7E-22	1	122	IPR003441	NAC domain
PROSITE profile	PS51005	45.361	1	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MRFAPTEEEL ICHLRKKIKN EPFEDVCICS VNFYKYNPWE LTDMYPTLAT DEWYFFTSRE 60 FKYPNGSRPN RAAGDGYWKA TVADQKIQER QEVIGFKKTL VFYHGKAPNG KKTNWIMHEY 120 TLRQRSTRND ANNNMQSDNC VLCRIHERKR TAVIQHKL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-44	1	152	21	169	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-44	1	152	21	169	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-44	1	152	21	169	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-44	1	152	21	169	NO APICAL MERISTEM PROTEIN
4dul_A	3e-44	1	152	21	169	NAC domain-containing protein 19
4dul_B	3e-44	1	152	21	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in regulation of seed germination under flooding. {ECO:0000269\|PubMed:19176720}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV45902.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By low-oxygen stress. {ECO:0000269\|PubMed:19176720}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019157746.1	4e-49	PREDICTED: NAC transcription factor 32-like
Swissprot	Q8H115	5e-47	NA102_ARATH; NAC domain-containing protein 102
TrEMBL	A0A2Z7CFV0	1e-117	A0A2Z7CFV0_9LAMI; NAC domain-containing protein 2-like
STRING	PGSC0003DMT400023917	5e-48	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63790.1	2e-49	NAC domain containing protein 102

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]