PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV45962.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 325aa    MW: 36104.3 Da    PI: 6.9352
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV45962.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.3e-07265306443
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      W++ Ed+ l++a k ++++   +W++Ia+ ++  +t   c  r
       KZV45962.1 265 WSAGEDLALLNALKTFPKDaplRWEKIAASLP-DKTKSACMKR 306
                      ********************************.8888889877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.411161204IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.1E-4162202IPR009057Homeodomain-like
SMARTSM007172.6E-5165218IPR001005SANT/Myb domain
SuperFamilySSF466892.73E-6167213IPR009057Homeodomain-like
CDDcd001673.60E-4168215No hitNo description
Gene3DG3DSA:1.10.10.607.6E-7257316IPR009057Homeodomain-like
PROSITE profilePS500907.352257311IPR017877Myb-like domain
SuperFamilySSF466891.01E-9260312IPR009057Homeodomain-like
SMARTSM007175.4E-8261313IPR001005SANT/Myb domain
PfamPF002493.2E-6265306IPR001005SANT/Myb domain
CDDcd001673.05E-7265311No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEFLDEYESR PRFLIQSKQL PQPLDSESIH CSSYIHKPSL FVSLSLSIAI LYIAFRYIDL  60
EPLKSILLWL SFSLLLGPFA PPSLTAGDIR VGLGPIIEDA PDLVVDTDEK VSRRSSKPTR  120
KPCEDPVRFD GIFDKSAGVN GFGSSLDLDK KEGDSCQSLV EEKFEEGEWT NTDEDVLRKL  180
MGKHPVGQPG RWEAIAKGFK GKRTVESVIV KAKEMGVKKA TDQDSFDKFL KDRKPVDKRV  240
LDEAGDGGVG VVHKNVQEGM KESGWSAGED LALLNALKTF PKDAPLRWEK IAASLPDKTK  300
SACMKRVTEL KKDFRNSRTS TGQAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV45962.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082375.11e-124dnaJ homolog subfamily C member 2-like
RefseqXP_011082376.11e-124dnaJ homolog subfamily C member 2-like
TrEMBLA0A2Z7CG060.0A0A2Z7CG06_9LAMI; DnaJsubfamily C member 2-like
STRINGPGSC0003DMT4000622215e-99(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126681011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.17e-61MYB_related family protein