PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV46175.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family M-type_MADS
Protein Properties Length: 246aa    MW: 27811.5 Da    PI: 4.9747
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV46175.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.71.7e-141150342
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 +n+  r+ +f kR +g++KK eELS+LC+++++ i +s+
  KZV46175.1 11 LNNQAERKASFKKRCKGLMKKVEELSTLCGVDACAITYSE 50
                6899**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.054150IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-15160IPR002100Transcription factor, MADS-box
CDDcd002665.01E-22285No hitNo description
SuperFamilySSF554551.44E-20395IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-6323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-141250IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MARKKVTLAF LNNQAERKAS FKKRCKGLMK KVEELSTLCG VDACAITYSE FQPQPEVWPS  60
PPEARRVLER FLDQPDMDRT RFMDNQMSFT RQRIEKTTNK LRRLQRENKR KELTIFMFQC  120
IEGTADIRNF DIRDKGEMNV VIEDVLREIT GRMERLNASG EGPSTAMAMG EEPKAAHGEG  180
SSAAAAVGTQ EVAAQPGLME ESENQSGYSY WMNMLMSPID DFEWNTFAPG DLPDRNPDAP  240
SAPGTD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV46175.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088788.13e-56agamous-like MADS-box protein AGL80
TrEMBLA0A2Z7CHM80.0A0A2Z7CHM8_9LAMI; Uncharacterized protein
STRINGPOPTR_0005s00420.11e-49(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.19e-41AGAMOUS-like 80