PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV46181.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family M-type_MADS
Protein Properties Length: 185aa    MW: 20457.6 Da    PI: 10.4728
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV46181.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.31.7e-123067239
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                ++++ s r+ +f kR +g++KK  ELS+LC+++++ i 
  KZV46181.1 30 FVSDRSERKASFKKRSKGLIKKVAELSTLCGVDACAIT 67
                57899******************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.1E-62080IPR002100Transcription factor, MADS-box
CDDcd002662.58E-152486No hitNo description
PROSITE profilePS5006611.0453166IPR002100Transcription factor, MADS-box
PfamPF003195.5E-133167IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-133183IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MSKRNHNLLR EHAGTLISGM HIEKISVAYF VSDRSERKAS FKKRSKGLIK KVAELSTLCG  60
VDACAITHNE FQPQPEVWWS SKRGAGCGTL MEQPEMKKTN HWLLLGEKVK ASKSATTLVG  120
LINIFKYEKP GGSSLSSRNP PDASTRYRLK PPMGLISSTN SSMRSPVDSY SPPGIPAYCT  180
VTLFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV46181.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7CGJ51e-135A0A2Z7CGJ5_9LAMI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.22e-16M-type_MADS family protein