PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV46501.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

GRAS

Protein Properties

Length: 410aa MW: 45577.3 Da PI: 6.2908

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV46501.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	370.6	2.1e-113	40	409	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.sseelaalklfsevsPilkfshlta 98 ++L++cAeav+ +d++ a+ lL++l+ +a g+++qR+a++f+++La rla + +++ + p+ + ++ s+++ al+l +e P+++f+h++a KZV46501.1 40 LQQLISCAEAVACRDKSHASYLLSELRANALVFGTSFQRVASCFVQGLADRLAMvQPLGTVGFVVPRMNVTDAlSDKKEEALRLVYENLPYFQFGHFVA 138 689************************************************943445555555555544446999999*************** PP GRAS 99 NqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 N Ilea+ege+ vH++D+++s +G QW L+++La+R+++p +lRiTgvg +++ +++g+ L+ +A++lg++++f++ v+++le+l++++ KZV46501.1 139 NASILEAFEGESLVHVVDLGMSlglpHGYQWHGLIHSLANRSSPPSRLRITGVGL----CADKFRAIGDELEAYAQTLGLNLDFSI-VESTLENLNPKD 232 **************99874444778**********************....**********************9.7******* PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 v pgE+l+Vn++++lh++++es + +vL+++ lsPk++v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ + r+k+E+++++ KZV46501.1 233 VVVYPGEVLVVNSIFKLHSVVKESRGALN---SVLQTIHVLSPKLMVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKMEQFYFAD 328 *****************88877777...8************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+p+pl+ + +qak l++++ +g++ ee+g+lvlgWk++p+v++S+W+ KZV46501.1 329 EIKNIVSCEGLARVERHERVDQWRRRMSRAGFQPYPLK--MLSQAKQWLNNINtCEGFTTVEEKGCLVLGWKSKPIVAASCWK 409 ********************************96..79**************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	56.626	13	390	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.2E-111	40	409	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MYNQRYLVAE AVEEAVAAIS NVEDGVGAEG EGNGDGMKLL QQLISCAEAV ACRDKSHASY 60 LLSELRANAL VFGTSFQRVA SCFVQGLADR LAMVQPLGTV GFVVPRMNVT DALSDKKEEA 120 LRLVYENLPY FQFGHFVANA SILEAFEGES LVHVVDLGMS LGLPHGYQWH GLIHSLANRS 180 SPPSRLRITG VGLCADKFRA IGDELEAYAQ TLGLNLDFSI VESTLENLNP KDVVVYPGEV 240 LVVNSIFKLH SVVKESRGAL NSVLQTIHVL SPKLMVLVEQ DSSHNGPFFL GRFMEALHYY 300 SAIFDSLDAM LPKYDTRRAK MEQFYFADEI KNIVSCEGLA RVERHERVDQ WRRRMSRAGF 360 QPYPLKMLSQ AKQWLNNINT CEGFTTVEEK GCLVLGWKSK PIVAASCWKC

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MYNQRYLVAE AVEEAVAAIS NVEDGVGAEG EGNGDGMKLL QQLISCAEAV ACRDKSHASY  60
LLSELRANAL VFGTSFQRVA SCFVQGLADR LAMVQPLGTV GFVVPRMNVT DALSDKKEEA  120
LRLVYENLPY FQFGHFVANA SILEAFEGES LVHVVDLGMS LGLPHGYQWH GLIHSLANRS  180
SPPSRLRITG VGLCADKFRA IGDELEAYAQ TLGLNLDFSI VESTLENLNP KDVVVYPGEV  240
LVVNSIFKLH SVVKESRGAL NSVLQTIHVL SPKLMVLVEQ DSSHNGPFFL GRFMEALHYY  300
SAIFDSLDAM LPKYDTRRAK MEQFYFADEI KNIVSCEGLA RVERHERVDQ WRRRMSRAGF  360
QPYPLKMLSQ AKQWLNNINT CEGFTTVEEK GCLVLGWKSK PIVAASCWKC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	6e-57	46	408	25	377	Protein SCARECROW
5b3h_D	6e-57	46	408	25	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV46501.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011084871.1	0.0	DELLA protein RGL1-like
TrEMBL	A0A2Z7CHH2	0.0	A0A2Z7CHH2_9LAMI; Uncharacterized protein
STRING	XP_009359535.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8167	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	1e-78	RGA-like 1