PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV46527.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

NF-YB

Protein Properties

Length: 556aa MW: 60896.9 Da PI: 4.7303

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV46527.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	65.4	1.1e-20	418	498	11	91
NF-YB 11 anvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 a +++i+k++lP + ++++da++++ ec +efi +++se+++ c+re+++ti+++ +l al lGf +y+e++ + +++r KZV46527.1 418 ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCNREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHR 498 6789*******************************************************************9987666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.390.10	6.0E-25	27	148	IPR029017	Enolase N-terminal domain-like
SuperFamily	SSF54826	3.25E-19	27	151	IPR029017	Enolase N-terminal domain-like
CDD	cd03319	7.06E-108	33	355	No hit	No description
Pfam	PF02746	7.4E-8	38	150	IPR013341	Mandelate racemase/muconate lactonizing enzyme, N-terminal domain
SuperFamily	SSF51604	2.75E-50	141	386	IPR029065	Enolase C-terminal domain-like
Gene3D	G3DSA:3.20.20.120	5.1E-59	149	380	IPR029065	Enolase C-terminal domain-like
SMART	SM00922	2.2E-17	167	261	IPR013342	Mandelate racemase/muconate lactonizing enzyme, C-terminal
Pfam	PF13378	1.2E-33	171	380	IPR029065	Enolase C-terminal domain-like
Pfam	PF00808	3.1E-18	418	478	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	3.6E-34	418	538	IPR009072	Histone-fold
SuperFamily	SSF47113	3.19E-31	418	541	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006518	Biological Process	peptide metabolic process
GO:0000287	Molecular Function	magnesium ion binding
GO:0016854	Molecular Function	racemase and epimerase activity
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence Send to blast
MATTPPAVQL TTSFGFKSLM ETFIIDVHKA EGRPLNVPLI SPFTIASSRL DKVENVAIRV 60 ELNNGCVGWG ETPILPFVTA EDQPLALAKT AEASQFLKRS RGKTLGQVLS EIDQTILPGH 120 SFASVRAGVE MALIDAVANS IGLPLWKLFG GFSNEITTDI TIPIVSPTKA AELASKYNNQ 180 GFKILKLKVG KNLTSDIQVL QAIREVHPDC LFILDANEGY TSEEAIQVLE KLHEMEVTPI 240 LFEQPVHRDD WEGLGYVSEI ARNKYSVSVA ADESCRSLDD VKKIARENLA DVINIKLAKV 300 GVLGALKIID LARASGLDLM IGGMVETRLA MGFAGNLAAG LGCFKFIDLD TPILLAEDPV 360 HEGYKVSGPV YKFSNARGHG GFLHWDDTLW SIMEPMDIVG KIKEDASLPK VSLNDLAATM 420 TKIIKEMLPP DVRVARDAQD LLIECCVEFI NLISSESNEV CNREDKRTIA PEHVLKALEV 480 LGFGEYIEEV YAAYEQHRLE TMDTPRSGKL SNGAEMTEEE ALVEQQRMFA EARARMNGGT 540 VVPKQSDSET RPSLSS

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence Send to blast

MATTPPAVQL TTSFGFKSLM ETFIIDVHKA EGRPLNVPLI SPFTIASSRL DKVENVAIRV  60
ELNNGCVGWG ETPILPFVTA EDQPLALAKT AEASQFLKRS RGKTLGQVLS EIDQTILPGH  120
SFASVRAGVE MALIDAVANS IGLPLWKLFG GFSNEITTDI TIPIVSPTKA AELASKYNNQ  180
GFKILKLKVG KNLTSDIQVL QAIREVHPDC LFILDANEGY TSEEAIQVLE KLHEMEVTPI  240
LFEQPVHRDD WEGLGYVSEI ARNKYSVSVA ADESCRSLDD VKKIARENLA DVINIKLAKV  300
GVLGALKIID LARASGLDLM IGGMVETRLA MGFAGNLAAG LGCFKFIDLD TPILLAEDPV  360
HEGYKVSGPV YKFSNARGHG GFLHWDDTLW SIMEPMDIVG KIKEDASLPK VSLNDLAATM  420
TKIIKEMLPP DVRVARDAQD LLIECCVEFI NLISSESNEV CNREDKRTIA PEHVLKALEV  480
LGFGEYIEEV YAAYEQHRLE TMDTPRSGKL SNGAEMTEEE ALVEQQRMFA EARARMNGGT  540
VVPKQSDSET RPSLSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ik4_A	2e-67	35	380	15	354	Mandelate racemase/muconate lactonizing protein
3ik4_B	2e-67	35	380	15	354	Mandelate racemase/muconate lactonizing protein
3ik4_C	2e-67	35	380	15	354	Mandelate racemase/muconate lactonizing protein
3ik4_D	2e-67	35	380	15	354	Mandelate racemase/muconate lactonizing protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Catalyzes the epimerization of various hydrophobic and polar dipeptides. Has epimerase activity with L-Ala-L-Ala, L-Ala-L-Ser, L-Ala-L-Thr and L-Ala-L-Trp (in vitro). {ECO:0000269\|PubMed:22392983}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV46527.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072912.1	0.0	L-Ala-D/L-amino acid epimerase isoform X1
Swissprot	B9I2J6	0.0	AXEP_POPTR; L-Ala-D/L-amino acid epimerase
TrEMBL	A0A2Z7CKV6	0.0	A0A2Z7CKV6_9LAMI; L-Ala-D/L-amino acid epimerase
STRING	Migut.I00409.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.4	1e-85	nuclear factor Y, subunit B13

Publications ? help Back to Top
Tuskan GA, et al. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science, 2006. 313(5793): p. 1596-604 [PMID:16973872] Lukk T, et al. Homology models guide discovery of diverse enzyme specificities among dipeptide epimerases in the enolase superfamily. Proc. Natl. Acad. Sci. U.S.A., 2012. 109(11): p. 4122-7 [PMID:22392983]