PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV46537.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HB-other
Protein Properties Length: 353aa    MW: 39965.2 Da    PI: 6.4663
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV46537.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.87.7e-083023352154
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 k +yp++e++++L +++gL+ +q+ +WF N+R +
  KZV46537.1 302 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 335
                 469*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.3E-1991135IPR005540KNOX1
PfamPF037901.7E-1793134IPR005540KNOX1
SMARTSM012566.3E-26145200IPR005541KNOX2
PfamPF037913.3E-19149199IPR005541KNOX2
PROSITE profilePS5007111.726276339IPR001356Homeobox domain
SMARTSM003892.9E-11278343IPR001356Homeobox domain
SuperFamilySSF466893.38E-16278343IPR009057Homeodomain-like
CDDcd000862.38E-11279338No hitNo description
Gene3DG3DSA:1.10.10.602.2E-25283341IPR009057Homeodomain-like
PfamPF059209.3E-18296335IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MPLDYSDHHH SAAVFRSILP DHHHSPEEKP PPSATANNTW LHHQWLTNQN SQRSPLDKSD  60
HHRLDSGEGD NSNSNGGGNS NGSSGSNWER EKCKADILGH PLYEQLLSAH VACLRIATPV  120
DQLPRIDAQL AQSQQVVAKY SVLGHGQRPL DDKELDHFMT HYVLLLSSFK EQLQQHVRVH  180
AMEAVMACWE LEQSLQSLTG VAPGEGTGAT MSDDDEDQVD SETNLFDESL DGPDSMGFGP  240
LVPTESERSL MERVRLDMLY STQGYKDKIV DIREEILRKR RAGKLPGDTT SVLKAWWQSH  300
SKWPYPTEED KARLVQETGL QLKQINNWFI NQRKRNWHSN SSSSNSQKSK RKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332352RKRNWHSNSSSSNSQKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV46537.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084050.10.0homeobox protein knotted-1-like LET12 isoform X2
SwissprotO223001e-159LET12_SOLLC; Homeobox protein knotted-1-like LET12
TrEMBLA0A2Z7CKW50.0A0A2Z7CKW5_9LAMI; Uncharacterized protein
STRINGMigut.K00376.1.p1e-170(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.11e-146KNOTTED1-like homeobox gene 4