PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV46604.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family FAR1
Protein Properties Length: 164aa    MW: 18962.8 Da    PI: 10.7645
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV46604.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1781.8e-2426122190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                 +fYn+YA+++GFs r ++skk+k ++e+++++fvC keg+++e +++      +  ++r r   rtgCk kl++ ke+  ++w ++++ ++HnH+l+
  KZV46604.1  26 SFYNQYARQAGFSARLNNSKKNKITNEVVWKQFVCVKEGYTDEIRSSkkligdQPIRERARGGVRTGCKSKLTIVKEQtGSNWIISTFIENHNHQLS 122
                 5***************************************99987777899866667778999**********99998899**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-2226122IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MYVPQVVDER KPKIRMRFAS IDEAFSFYNQ YARQAGFSAR LNNSKKNKIT NEVVWKQFVC  60
VKEGYTDEIR SSKKLIGDQP IRERARGGVR TGCKSKLTIV KEQTGSNWII STFIENHNHQ  120
LSTPSKVHLL RSHRSVSTTK KALTQQFAKA NVPTYQQMRL LEIE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV46604.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015878435.17e-62protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2Z7CPQ51e-119A0A2Z7CPQ5_9LAMI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-24FAR1-related sequence 5