PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV46794.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family G2-like
Protein Properties Length: 230aa    MW: 25267.1 Da    PI: 10.25
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV46794.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like72.37.4e-234792146
     G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehv 46
                kprl+Wtp+LHerF++av+qLGG+ekAtPk++l++++++gLt + +
  KZV46794.1 47 KPRLKWTPDLHERFIQAVNQLGGAEKATPKSVLKVIGIQGLTKYRL 92
                79****************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-184692IPR009057Homeodomain-like
SuperFamilySSF466893.76E-84690IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-154789IPR006447Myb domain, plants
PfamPF002493.8E-64989IPR001005SANT/Myb domain
PfamPF143792.9E-13140181IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MYHHPQHQGN SFHPSSRMSI PPGRPLSVQV AKVTEDSGLV LSDDAYKPRL KWTPDLHERF  60
IQAVNQLGGA EKATPKSVLK VIGIQGLTKY RLGKNLHGQV NGGSNKAATG QKISETNRMQ  120
MTDHYMATLP TNSTHLGGVM QLQVEVQRRL SVQLEVQRQL QLCIEAQSIY LQAVLAKVQE  180
TLGRQNIDGV AGLDFAKVQL SCLVSSSQCL NSKLSAIKKT CRYVPAANTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-144797151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-144797151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-144797151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-144797151Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV46794.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077862.11e-86myb-related protein 2 isoform X1
SwissprotQ9SQQ91e-63PHL9_ARATH; Myb-related protein 2
TrEMBLA0A2Z7CQ871e-170A0A2Z7CQ87_9LAMI; Transcription factor
STRINGXP_002525443.18e-82(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29462451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.32e-61G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]