PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV46895.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family M-type_MADS
Protein Properties Length: 228aa    MW: 26201.9 Da    PI: 7.6257
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV46895.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF391.1e-121048240
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                +i n+++r   + +R +g+lKK +ELS+LC++++a++i 
  KZV46895.1 10 KITNQRQRDKVYKNRSEGLLKKMNELSILCGIDAAIVIH 48
                799*********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.965147IPR002100Transcription factor, MADS-box
CDDcd002662.42E-15184No hitNo description
SMARTSM004327.9E-5160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.81E-16494IPR002100Transcription factor, MADS-box
PfamPF003193.1E-121049IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MPKKIINHEK ITNQRQRDKV YKNRSEGLLK KMNELSILCG IDAAIVIHKR DENNATLWPS  60
SEIYRQRMQK FLNFSSAERE KKMVTHDKYL DQRLLDESRN LLKSRRTNEV LEGELVTDDV  120
TAGTISCEQL NLIHMNNMKV LADDMIEKVD EVISDYQMSE QEQQPPNPRS FVIPPPVPNM  180
SSIEDLLSWP MESGQRHGRS IRFKATIDDG VASSSNVLNI STPPPRKA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV46895.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7CKT21e-168A0A2Z7CKT2_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.22e-18M-type_MADS family protein