PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV47108.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

GRAS

Protein Properties

Length: 721aa MW: 79145.5 Da PI: 5.6237

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV47108.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	285.5	1.5e-87	360	720	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 +lL+++Ae + +g++++aq +Larl++l sp ++p+ R a+y++eAL++ l+ ++ + +pp+ ++ + ++ a+k+fs+vsP+++f+++taNqa KZV47108.1 360 DLLYKVAESMMAGNFSNAQGILARLNQLLSPIAEPFLRSAFYVKEALQSVLVV--PNHIAPVPPRIPTPFDGMFKMGAYKVFSDVSPVIQFTNFTANQA 456 68***********************************************98..888899********************************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..eleeLrvkp 198 lea++++e++H+iDfdi+ G++W ++lq+L +++g s++iT+++sp s+++ e++ ++e+La+fA+ lg++fe +v+ ++++ +++ +r ++ KZV47108.1 457 FLEALDNSEHIHVIDFDIGFGAHWSSFLQELPRKNGGVISVKITAFVSPCSHHAIEISLMHENLAHFANGLGIKFELDVVNIDSFDPNsgSVSLFRSSE 555 ***************************************************************************97776664434888999999 PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297 Ea+aVn+ + ++ l+s ++ ++l+k+lsPk++v ++ ++ + +F +++l++l+yy al+ s++a+ +s++++k+E++l++++i++ KZV47108.1 556 SEAIAVNFPIWSFTSC-----LSS-LPSYISLIKKLSPKIIVSLDRGFERIDLPFSHHILHTLQYYEALLASVDAT-NMASDAAKKIEKFLFQPRIEST 647 *****9777776.....444.6679****************************************887.6799************** PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 v + + + Wr+ +++aGF p+p+s++ +qa+++l++++++g++ve++++slvl+W++ +L+s+SaW+ KZV47108.1 648 VFGRLFY----SDIMPPWRNLFTTAGFLPAPISSFSLTQADCVLKRTQVRGFHVEKQQASLVLCWQQCELISISAWT 720 99998....88899************************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.543	332	700	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.3E-85	360	720	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence Send to blast
MIEMQYNYND LRAKGTGGGF ASSSFEANFK KDGTFTKIEP ISVLDTRSPS PSTSTSTFPL 60 YNNATQAGNT AANKHTMVAS ATTGGGGGGE EEYSIGPLSL HDGALELCGH WISDKFNLGV 120 EERENFSESA ASQSEILKLF LQAGNQNVFQ CNMGFGAMDT GLEFTGFSGS TLMANDFSSY 180 NTPLLSLSES GFSFNDNKDL FGSDSNCVLS HNNGNTLACL GPGTVFEHQH EILEEKAEIF 240 NPQVCLTPSV VQNAANLSMT NFNPSIFGTQ QEQHHRLQSC HNNPNVGITN SKLCSQNRNV 300 QFVDSGLELL IMKQQQSPQI LQHLEDGKKK PLLVPKHETV DGCLGQLSTI PSEQQQVVCD 360 LLYKVAESMM AGNFSNAQGI LARLNQLLSP IAEPFLRSAF YVKEALQSVL VVPNHIAPVP 420 PRIPTPFDGM FKMGAYKVFS DVSPVIQFTN FTANQAFLEA LDNSEHIHVI DFDIGFGAHW 480 SSFLQELPRK NGGVISVKIT AFVSPCSHHA IEISLMHENL AHFANGLGIK FELDVVNIDS 540 FDPNSGSVSL FRSSESEAIA VNFPIWSFTS CLSSLPSYIS LIKKLSPKII VSLDRGFERI 600 DLPFSHHILH TLQYYEALLA SVDATNMASD AAKKIEKFLF QPRIESTVFG RLFYSDIMPP 660 WRNLFTTAGF LPAPISSFSL TQADCVLKRT QVRGFHVEKQ QASLVLCWQQ CELISISAWT 720 C

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence Send to blast

MIEMQYNYND LRAKGTGGGF ASSSFEANFK KDGTFTKIEP ISVLDTRSPS PSTSTSTFPL  60
YNNATQAGNT AANKHTMVAS ATTGGGGGGE EEYSIGPLSL HDGALELCGH WISDKFNLGV  120
EERENFSESA ASQSEILKLF LQAGNQNVFQ CNMGFGAMDT GLEFTGFSGS TLMANDFSSY  180
NTPLLSLSES GFSFNDNKDL FGSDSNCVLS HNNGNTLACL GPGTVFEHQH EILEEKAEIF  240
NPQVCLTPSV VQNAANLSMT NFNPSIFGTQ QEQHHRLQSC HNNPNVGITN SKLCSQNRNV  300
QFVDSGLELL IMKQQQSPQI LQHLEDGKKK PLLVPKHETV DGCLGQLSTI PSEQQQVVCD  360
LLYKVAESMM AGNFSNAQGI LARLNQLLSP IAEPFLRSAF YVKEALQSVL VVPNHIAPVP  420
PRIPTPFDGM FKMGAYKVFS DVSPVIQFTN FTANQAFLEA LDNSEHIHVI DFDIGFGAHW  480
SSFLQELPRK NGGVISVKIT AFVSPCSHHA IEISLMHENL AHFANGLGIK FELDVVNIDS  540
FDPNSGSVSL FRSSESEAIA VNFPIWSFTS CLSSLPSYIS LIKKLSPKII VSLDRGFERI  600
DLPFSHHILH TLQYYEALLA SVDATNMASD AAKKIEKFLF QPRIESTVFG RLFYSDIMPP  660
WRNLFTTAGF LPAPISSFSL TQADCVLKRT QVRGFHVEKQ QASLVLCWQQ CELISISAWT  720
C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-28	364	720	24	378	Protein SCARECROW
5b3h_D	2e-28	364	720	24	378	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV47108.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070112.1	0.0	scarecrow-like protein 22 isoform X1
Refseq	XP_020547697.1	0.0	scarecrow-like protein 22 isoform X2
TrEMBL	A0A2Z7CJJ4	0.0	A0A2Z7CJJ4_9LAMI; Scarecrow-like protein 22

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6986	19	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	4e-90	GRAS family protein