PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV47133.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 435aa    MW: 46767.6 Da    PI: 5.8383
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV47133.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.23.8e-052732963255
                 ..TTS-STCHHHHHHHHHHHHHHH CS
         HLH  32 kapskKlsKaeiLekAveYIksLq 55 
                 +++s++ +Ka++L +++eY+k+Lq
  KZV47133.1 273 HNQSERTDKASMLDEVIEYVKQLQ 296
                 56999******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.765242295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-6272310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.69E-4273300No hitNo description
SuperFamilySSF474592.09E-7274324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MNQCVPSWDL DDNSALPGLD YEMAELTWKN GQLAMHGLGP PRVPPTKYTT WDKPRPGAGT  60
LESIVNQATR LPYPKYASDG SGDDVVPWFD HRKSMANPAA SASATMTMDA LVPCNKTNLI  120
NGNDNPVPSS QILESGTCAP GCSTRVGSCS GVAATLDGGV GGGNHVPRDV DFNSRETNGS  180
ASESATCDRD SRQLTLDTCE KDQMGAAWFT SPSTDSPENT SSGKEDSKST GEDHDSVRHI  240
RRQRDKGDID EIKKRGSGKS SVLTKRSRAA AIHNQSERTD KASMLDEVIE YVKQLQAQVQ  300
VMRMNMSHMN MMPLAAMQQH QHIQMSMMNP MGMGMGMGMG MGAGIMDINA MGRLGSGMLP  360
PPTAGIPPAP GSFMPVGAAW DNSGERLQGP TSVMTDPLSM FMAWQQSQIM TIDAYNRLAA  420
LYQQFQPPPG SSSKN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV47133.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093295.11e-136LOW QUALITY PROTEIN: transcription factor UNE10
TrEMBLA0A2Z7CK540.0A0A2Z7CK54_9LAMI; Uncharacterized protein
STRINGcassava4.1_007418m1e-107(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43672132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-52bHLH family protein