PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV47275.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family M-type_MADS
Protein Properties Length: 83aa    MW: 9314.88 Da    PI: 9.923
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV47275.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.41.9e-28959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+ien   rqvtfskRr+g+lKKA+EL vLCda+vaviifsstg+l+e+ss
  KZV47275.1  9 KKIENANSRQVTFSKRRAGLLKKANELAVLCDADVAVIIFSSTGRLFEFSS 59
                78***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.029161IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-30265IPR002100Transcription factor, MADS-box
CDDcd002652.24E-38260No hitNo description
PRINTSPR004042.9E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.6E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-293859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MGRGKIEIKK IENANSRQVT FSKRRAGLLK KANELAVLCD ADVAVIIFSS TGRLFEFSSS  60
EYACLPSRLH AQFLFLDLFI FSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-19161161MEF2C
5f28_B1e-19161161MEF2C
5f28_C1e-19161161MEF2C
5f28_D1e-19161161MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV47275.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021739323.11e-31agamous-like MADS-box protein AGL15 isoform X1
SwissprotQ392956e-30AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLA0A2Z7CLR41e-52A0A2Z7CLR4_9LAMI; Uncharacterized protein
STRINGXP_010694750.12e-30(Beta vulgaris)
STRINGGorai.008G112400.13e-30(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-31AGAMOUS-like 15