PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV47338.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 192aa    MW: 21233 Da    PI: 7.052
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV47338.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.0009587109123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C++C+k F++   L  H  +H
  KZV47338.1  87 YRCEICSKLFRSFQALGGHRASH 109
                 9**********999999888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.82E-885156No hitNo description
PfamPF139121.1E-1086111IPR007087Zinc finger, C2H2
SMARTSM003550.08687109IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.86887114IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
SMARTSM003550.48134156IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.621134156IPR007087Zinc finger, C2H2
PfamPF139129.1E-7136156IPR007087Zinc finger, C2H2
PROSITE patternPS000280136156IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MDEGFLVDEE KVEADECLSP PLGSESLSSS VSDVTHEEDA AHCLIMLSRD KRRDEVECPT  60
EGKEKKSKSQ DSCLEKVMKN KARAKYYRCE ICSKLFRSFQ ALGGHRASHN KIRVNTRDSG  120
GDSKSTTMVL ERTIACPLCP RVFTSGQAFG GHKRTHFIAA TPKTIAVTGS IPGNGECFDI  180
DLNLPPSFDQ RF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV47338.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090203.16e-39zinc finger protein ZAT4
TrEMBLA0A2Z7CK681e-140A0A2Z7CK68_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-28C2H2-like zinc finger protein