PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV47610.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GATA
Protein Properties Length: 229aa    MW: 24810.7 Da    PI: 9.4334
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV47610.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.31.2e-19121155135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C+nC t +TplWR+gp+g+k+LCnaCG++++k+++
  KZV47610.1 121 CANCDTASTPLWRNGPRGPKSLCNACGIRFKKEER 155
                 ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.2E-18115167IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.521115151IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-13118155No hitNo description
Gene3DG3DSA:3.30.50.101.9E-16119155IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.03E-12120152No hitNo description
PROSITE patternPS003440121146IPR000679Zinc finger, GATA-type
PfamPF003202.4E-17121155IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MMHRCGNSDM VAGGCMCGMY HARRNSFSVR FSKNKDGYLE LNEGGMCSSG SNSPPSSVDC  60
TLSLGTPSTR LSDEKKLSSC MPAGLGWKSF PSKHMSPPPS AVRGGFNGDH SGRDPLLARR  120
CANCDTASTP LWRNGPRGPK SLCNACGIRF KKEERRATAA ASITNSGGGR GAGSQNVMKE  180
SRAPPQKTLY HPSSYTNELQ FAEEDDNRNS TSWRFTITDR QSLVHNFTS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV47610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022854388.15e-64GATA transcription factor 18-like
TrEMBLA0A2Z7CKK61e-169A0A2Z7CKK6_9LAMI; Uncharacterized protein
STRINGXP_009603282.11e-54(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38182346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.11e-38GATA transcription factor 19