PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV47828.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 184aa    MW: 20342.6 Da    PI: 8.3423
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV47828.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.6e-055375123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C++ Fs++  L  H++ H
  KZV47828.1 53 FVCHHCHRKFSNSQALGGHQNAH 75
                89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.06E-55080No hitNo description
PROSITE profilePS5015711.5725380IPR007087Zinc finger, C2H2
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEEHRPLLGV DDSYEPHEVQ VYAHSSSVTK LFGFTVEHKA PQVTQHDSEH KRFVCHHCHR  60
KFSNSQALGG HQNAHKKERQ RVKRAHSMGE HHRASHGHAA RSGTFVSPSA PISAYGARFL  120
SSGDRHNSRG FPHVLSGVPL RYSGGFQIFP PQTVELDGGR GDVGPLNVVE TIGVSEVLDV  180
DLHL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV47828.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100835.12e-52zinc finger protein 6-like
TrEMBLA0A2Z7CLL11e-131A0A2Z7CLL1_9LAMI; Zinc finger protein 6-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105631724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.13e-13C2H2 family protein