PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV48186.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ZF-HD
Protein Properties Length: 243aa    MW: 27319 Da    PI: 8.1588
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV48186.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer95.44.5e-3049102458
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                  ++YkeC+kNhA+++Gg+a+DGCgEf+p+ geegt++al C+AC+CHRnFHR+e +
   KZV48186.1  49 FKYKECMKNHAIAVGGNATDGCGEFLPD-GEEGTIEALSCSACNCHRNFHRKEIA 102
                  68*************************8.999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.1E-2749101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-2249101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.0E-2950101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.0351100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.609.5E-30154225IPR009057Homeodomain-like
SuperFamilySSF466891.62E-19157224IPR009057Homeodomain-like
TIGRFAMsTIGR015652.4E-27163219IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEVPSKEDEM PVPLTTRMIH QIPTAHNHNI VIPAYSCPQI IPSNSQIIFK YKECMKNHAI  60
AVGGNATDGC GEFLPDGEEG TIEALSCSAC NCHRNFHRKE IAADAENYCC RLDEYNPRNG  120
GKVSFLGHQR NALEYQAGTL VSSTTFARQM GGGAAAGPSQ VVKKRFRTKF TQEQKEKMQD  180
FAEKVGWKIQ KLEEYAVQSF CQEVGVEKRV LRVWMHNNKH NFTKKNISQP NGEKLNLQVS  240
ETN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-211642211875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV48186.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003633412.11e-78PREDICTED: zinc-finger homeodomain protein 4
RefseqXP_017979046.11e-78PREDICTED: zinc-finger homeodomain protein 4
SwissprotQ9M9S04e-60ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A2Z7CTL80.0A0A2Z7CTL8_9LAMI; Homeobox protein 31
STRINGVIT_12s0035g01880.t014e-78(Vitis vinifera)
STRINGEOY257746e-78(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51542338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-62homeobox protein 31