PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV48422.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family DBB
Protein Properties Length: 246aa    MW: 27063.9 Da    PI: 6.2272
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV48422.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.58.8e-06446541
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                 C+ +e  e++  C  ++  lC  C ++ H        H++v 
  KZV48422.1  4 QCSVCETAEAKVLCCADEAALCWGCDQKVHAAnklagkHQRVL 46
                7******99*********************6678888888775 PP
2zf-B_box24.84.4e-085597238
    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                e +kC+ ++e    +fC +++ llC++C  ++H+       H+
  KZV48422.1 55 ETPKCDICQEIAGYFFCLEDRALLCRKCDAAIHSTnalvclHQ 97
                6789******88*********************6566666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.485147IPR000315B-box-type zinc finger
CDDcd000211.10E-5347No hitNo description
SMARTSM003361.1E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.5654101IPR000315B-box-type zinc finger
SMARTSM003361.6E-954101IPR000315B-box-type zinc finger
PfamPF006432.1E-55588IPR000315B-box-type zinc finger
CDDcd000211.13E-757101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MKIQCSVCET AEAKVLCCAD EAALCWGCDQ KVHAANKLAG KHQRVLLSSS STSSETPKCD  60
ICQEIAGYFF CLEDRALLCR KCDAAIHSTN ALVCLHQRFL LTGVKLAPES PTLPKPTTPM  120
PSTTVVGTDF TQWPLDEILK FDGGFNQNAT LLLSKANSEK LGDPICSRPV EGSLEANECV  180
DQMPETFWAV PQITSQLTES ELHLSKSYLN PSNCATFVPD VISPWFQISR PHQEPQGTGS  240
KRRRQF
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV48422.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098187.18e-80B-box zinc finger protein 22
SwissprotQ9SYM24e-57BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A2Z7CMW80.0A0A2Z7CMW8_9LAMI; B-box zinc finger protein 22
STRINGXP_009762543.17e-76(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28922346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.16e-57light-regulated zinc finger protein 1