PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV48445.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

GRF

Protein Properties

Length: 393aa MW: 42604.9 Da PI: 8.9161

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV48445.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	80.3	1.8e-25	149	192	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e KZV48445.1 149 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHVHRGRNRSRKPVE 192 79***************************************998 PP
2	QLQ	45.1	3e-16	75	110	1	36
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 s+F+ aQ+q+L+ Q+l++++++a++ vP+eLl ++ KZV48445.1 75 SYFSLAQWQELELQALIFRHMIAGAAVPQELLHLVK 110 79*****************************98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.7E-7	75	111	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.0E-11	76	109	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	18.195	76	111	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.302	149	193	IPR014977	WRC domain
Pfam	PF08879	7.1E-22	150	192	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MDFDPKQRDG KDFETNANNS AKLPKLLLQP HLHASPDSNP SALTLFVPEP TSSSLPPTKF 60 NSLFCELDLF AGMGSYFSLA QWQELELQAL IFRHMIAGAA VPQELLHLVK KSLIASPSSY 120 YLSHSLQHHY PHYQPALVQS GYWGRAAMDP EPGRCRRTDG KKWRCSRDVV AGQKYCERHV 180 HRGRNRSRKP VEVPTSAAAI PYGGRAGSNG VGGEVLKSNN RVITSQGMVS SGGGGGTPRF 240 TLSGPSPSLD LLHLNHRPTE TIIEPKCLFE TQNDGQQGSP MLRHFFDGWP RSLDETTNSA 300 TTLSISMPGN PSSDFSLKVG SSSGDELGNH VTSLDRGRLQ LSWGVTWEAK PVAPMGGPLA 360 EALRSATSNS SPTSVLDPLP PRGQAPKASY VST

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MDFDPKQRDG KDFETNANNS AKLPKLLLQP HLHASPDSNP SALTLFVPEP TSSSLPPTKF  60
NSLFCELDLF AGMGSYFSLA QWQELELQAL IFRHMIAGAA VPQELLHLVK KSLIASPSSY  120
YLSHSLQHHY PHYQPALVQS GYWGRAAMDP EPGRCRRTDG KKWRCSRDVV AGQKYCERHV  180
HRGRNRSRKP VEVPTSAAAI PYGGRAGSNG VGGEVLKSNN RVITSQGMVS SGGGGGTPRF  240
TLSGPSPSLD LLHLNHRPTE TIIEPKCLFE TQNDGQQGSP MLRHFFDGWP RSLDETTNSA  300
TTLSISMPGN PSSDFSLKVG SSSGDELGNH VTSLDRGRLQ LSWGVTWEAK PVAPMGGPLA  360
EALRSATSNS SPTSVLDPLP PRGQAPKASY VST

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV48445.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077893.1	1e-144	growth-regulating factor 3
Swissprot	Q8L8A7	4e-73	GRF4_ARATH; Growth-regulating factor 4
TrEMBL	A0A2Z7CPY3	0.0	A0A2Z7CPY3_9LAMI; Growth-regulating factor 3
STRING	VIT_08s0007g03760.t01	1e-125	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3283	21	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	3e-51	growth-regulating factor 4

Publications ? help Back to Top
Kuijt SJ, et al. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol., 2014. 164(4): p. 1952-66 [PMID:24532604] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]