PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV48528.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family AP2
Protein Properties Length: 330aa    MW: 37282.2 Da    PI: 5.0906
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV48528.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.3e-16104155155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  KZV48528.1 104 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAVAYDMAAIEYRG 155
                 89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.2034194IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18104165IPR016177DNA-binding domain
CDDcd000184.65E-25104165No hitNo description
PfamPF008471.3E-11104155IPR001471AP2/ERF domain
PROSITE profilePS5103218.255105163IPR001471AP2/ERF domain
SMARTSM003805.0E-25105169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-18105164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGKLSQKNII DNPSKNTNVN HATNPGMKVK RTRKTILETP LLNGALFIAG HRWTGRYEAH  60
LWDKNCWNEA QNKKGSAYDD EDAAAHAYDL AALKKSSGFS RGVSKYRGVA RHHHNGRWEA  120
RIGRVFGNKY LYLGTYATQE EAAVAYDMAA IEYRGLNAVT NFDLSRYIKW LRPNNNNNNN  180
NNNVDNNNVD NNKLHENMEE NLIPRADHDN LDMVSTTLPP LQQPSDAFDA TTSQPPPAIT  240
TTTSALGLLL QSSKFKEMME MTLAAEYPST TQDQFEYPPQ SSIPDDIKTC FESNDFCSYE  300
GDDIFEDLNS FMQPMVEFDS MLNGEDWSSN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV48528.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547685.11e-130AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2Z7CP180.0A0A2Z7CP18_9LAMI; Uncharacterized protein
STRINGMigut.K00298.1.p1e-120(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.21e-42ARIA-interacting double AP2 domain protein