PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV48640.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family M-type_MADS
Protein Properties Length: 250aa    MW: 27481.3 Da    PI: 7.4587
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV48640.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.55.5e-212471148
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                k+ien snrqvtfskRr g++KKA+E+++L +aeva+i+ s   +++ 
  KZV48640.1 24 KKIENLSNRQVTFSKRRVGLFKKASEICILSGAEVAIIVHSLGKRVFA 71
                68*************************************997766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.5E-291675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.3481676IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-241786IPR002100Transcription factor, MADS-box
CDDcd002655.06E-331787No hitNo description
PRINTSPR004042.2E-181838IPR002100Transcription factor, MADS-box
PfamPF003191.8E-192572IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-183853IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-185374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MLKNTSNIPF KKKTTQGRKK IEIKKIENLS NRQVTFSKRR VGLFKKASEI CILSGAEVAI  60
IVHSLGKRVF AFGHPSTDAV IERFLKDVAE PGSGGEARDN CASTAKVRDF NKHYLDMCKE  120
LEMEKKRKEM IEAEKRAVEG CGYTVGGGGY WWDEPVDSMD VEDLEQYMTA LGELINNVTM  180
RASDLMHAQS SNSLSPLPPQ SLPLPITTFG GLSNLDAEGC PTFGDTAAIL NQYPANGGFH  240
YGNTGWGAIQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV48640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012835329.16e-79PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2Z7CNH50.0A0A2Z7CNH5_9LAMI; Uncharacterized protein
STRINGMigut.N01120.1.p2e-78(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-32AGAMOUS-like 62