PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV49043.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ERF
Protein Properties Length: 268aa    MW: 28987.1 Da    PI: 8.2972
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV49043.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1892141255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  KZV49043.1  92 TYRGVRKRN-WGKWVCEIREPRK---KSRIWLGTYQTAEMAARAHDVAALAIKG 141
                 69****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.01E-2292150IPR016177DNA-binding domain
PROSITE profilePS5103223.51292149IPR001471AP2/ERF domain
PfamPF008475.1E-1392141IPR001471AP2/ERF domain
SMARTSM003802.5E-3492155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3392150IPR001471AP2/ERF domain
PRINTSPR003679.0E-1193104IPR001471AP2/ERF domain
CDDcd000187.51E-3293151No hitNo description
PRINTSPR003679.0E-11115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MEDTLVVNVA QDKVSNIPTA AAAASFSSSS TASASFSASS VSPSTSSNSC LTNGPQSTTG  60
CKKCSKSQNV TKRGTHQDSK RKTSGGGIKH PTYRGVRKRN WGKWVCEIRE PRKKSRIWLG  120
TYQTAEMAAR AHDVAALAIK GKSACLNFPH LAHEFPRPAS TAPKDIQAAA AEAAAATFPD  180
EVVRAETGRA MLPSSHSSTH LALHHRQESR NSDSTAHVYD DTFFDLPDLA LDSNMDHTDK  240
YCYNYASSWQ LAGSDIGFLV EDPFSWEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-2085150773Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV49043.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089857.11e-91ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ76e-62ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2Z7CQJ30.0A0A2Z7CQJ3_9LAMI; Uncharacterized protein
STRINGXP_009771308.16e-73(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.19e-59ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]