PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV50266.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

C3H

Protein Properties

Length: 677aa MW: 74255.1 Da PI: 6.0355

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV50266.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.1	5.6e-07	299	319	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G C++Gd C +aHg KZV50266.1 299 MCPDFRK-GACRRGDMCEYAHG 319 6****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	1.13E-17	37	159	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	4.9E-18	71	158	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	9.33E-15	72	159	No hit	No description
Pfam	PF12796	2.0E-10	72	148	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	17.582	79	182	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.014	79	109	IPR002110	Ankyrin repeat
PRINTS	PR01415	3.6E-5	80	95	IPR002110	Ankyrin repeat
SMART	SM00248	7.4E-5	114	146	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.209	114	149	IPR002110	Ankyrin repeat
PRINTS	PR01415	3.6E-5	133	147	IPR002110	Ankyrin repeat
SMART	SM00356	5.4E-5	294	320	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.5E-4	298	321	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.281	299	321	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-4	300	319	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.9E-4	327	357	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	30	329	352	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 677 aa Download sequence Send to blast
MCKLYQFIEV GSGQDSTAVI MSVDLSTIKS DDSFANLLEL AANNDVEGFE RFVECEPSSI 60 DEVGLWYGRR KDSNQMVLHH RTPLMVAATY GSIDVLKVIL SSHEVDVNRY CGVDKDTALH 120 CAASGGSTNA VNIVKLLLAA GADPNLTNAA GKFPLDITIV SPECPDNKFS LQMLLAVDAS 180 FDEGVLRVSR STSNTNSPPL SQSPGNGSPC SLSEMIPAEL NFNDVSVSSV PEKKEYPFDP 240 SLPDIKNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP RKFHYSCVMC 300 PDFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CNRRVCFFAH TQVELRPLYG 360 STGSAVPSPR SMTTACNAFD FSVAMNFLPG SPSSHPVMSP SPFSPPLSPS TNGVASTGWP 420 PQQNVPALLL PGSNLQSSRL RSSLNARDVP PEDLSIADID VQQRQLLDEL SIQSQQSAHT 480 NLLNLSARQK TLTPSNLEDF FSAESSSPRY SDQALASAVF SPTHRSATFH QFQQQQQSML 540 SPIKTNFSLR NNDHSILQSP FGVPSPSPGR MSPHNMDPFS PMNSRVSMLA QLEKQHQQFR 600 SLSSRDLSEA AAAVASLEDS WGSPNGIPGW AVTANELGRL KKSSSFETLN SGEEPDLSWV 660 HSLVKESPQD MQDKSAS

Sequence ? help Back to Top

Protein Sequence Length: 677 aa Download sequence Send to blast

MCKLYQFIEV GSGQDSTAVI MSVDLSTIKS DDSFANLLEL AANNDVEGFE RFVECEPSSI  60
DEVGLWYGRR KDSNQMVLHH RTPLMVAATY GSIDVLKVIL SSHEVDVNRY CGVDKDTALH  120
CAASGGSTNA VNIVKLLLAA GADPNLTNAA GKFPLDITIV SPECPDNKFS LQMLLAVDAS  180
FDEGVLRVSR STSNTNSPPL SQSPGNGSPC SLSEMIPAEL NFNDVSVSSV PEKKEYPFDP  240
SLPDIKNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP RKFHYSCVMC  300
PDFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CNRRVCFFAH TQVELRPLYG  360
STGSAVPSPR SMTTACNAFD FSVAMNFLPG SPSSHPVMSP SPFSPPLSPS TNGVASTGWP  420
PQQNVPALLL PGSNLQSSRL RSSLNARDVP PEDLSIADID VQQRQLLDEL SIQSQQSAHT  480
NLLNLSARQK TLTPSNLEDF FSAESSSPRY SDQALASAVF SPTHRSATFH QFQQQQQSML  540
SPIKTNFSLR NNDHSILQSP FGVPSPSPGR MSPHNMDPFS PMNSRVSMLA QLEKQHQQFR  600
SLSSRDLSEA AAAVASLEDS WGSPNGIPGW AVTANELGRL KKSSSFETLN SGEEPDLSWV  660
HSLVKESPQD MQDKSAS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV50266.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078886.1	0.0	zinc finger CCCH domain-containing protein 30-like
Refseq	XP_020549443.1	0.0	zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A2Z7CZF7	0.0	A0A2Z7CZF7_9LAMI; Uncharacterized protein
STRING	XP_006421436.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA883	24	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]