PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV50554.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 370aa    MW: 41461.4 Da    PI: 4.7964
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV50554.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66.2e-102933331055
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  KZV50554.1 293 RKRRERINERLRILQGLVPNG-----TKVDISTMLEEAVQYVKFLQ 333
                 9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.021283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-14283348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-11288342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.26E-11292337No hitNo description
PfamPF000102.8E-7293333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
METIGAISEG QWSSFNGLCS EEADFVAQLL GNCSLPNEMP ISFVSPTPDS NDISVEVDGS  60
MMYLSHKNAI THSFPRGNTN YTEDAAIFLP SISHDNYYSC ASQQLFVSNN NLMTMDCSIM  120
ETKNNGSRVC FLTNNVMEED DFLDREVSNN SLKSNENVPG DVLEGNNLQL RMVHEIPMPE  180
TLREDKFSVP SEMCKKRSRF PGDDQSNRSM KLKKSPKLDN NDYEDNYNEN GSTLTLKQRT  240
SSWCSEDESI ASLEHSHGVT STSIPKGGRV LNSNGKTRAS RGSATDPQSL YARKRRERIN  300
ERLRILQGLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS SDDLWMYAPI AYNGMDIGLD  360
LKIPFPKLQS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV50554.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088156.11e-125transcription factor bHLH139-like
TrEMBLA0A2Z7D0M60.0A0A2Z7D0M6_9LAMI; Basic helix-loop-helix family protein
STRINGPOPTR_0009s09210.17e-96(Populus trichocarpa)
STRINGXP_009602073.13e-96(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-48bHLH family protein