PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV50576.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

WOX

Protein Properties

Length: 267aa MW: 29874.3 Da PI: 5.3521

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV50576.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.9	2.7e-21	86	146	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql+ Le lF + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ KZV50576.1 86 RQRWTPTPMQLQYLEHLFDQgNGTPSKQKIKEITTELsqhgQISETNVYNWFQNRRARSKR 146 89***************99************************************97 PP
2	Wus_type_Homeobox	98.8	4e-32	86	148	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++ Le+l+++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq KZV50576.1 86 RQRWTPTPMQLQYLEHLFDQGNGTPSKQKIKEITTELSQHGQISETNVYNWFQNRRARSKRKQ 148 89***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-17	79	154	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.819	82	147	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.38E-19	83	153	IPR009057	Homeodomain-like
SMART	SM00389	4.7E-14	84	151	IPR001356	Homeobox domain
CDD	cd00086	1.33E-13	86	148	No hit	No description
Pfam	PF00046	5.1E-19	86	146	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MEWQKPPPPQ QGDDFNGGGG GMFVKVMTDE QMEDLRKQIA VYATICEQLV ELHKSLTSQN 60 DLPGVRFGNP YCDALITSGT HKITGRQRWT PTPMQLQYLE HLFDQGNGTP SKQKIKEITT 120 ELSQHGQISE TNVYNWFQNR RARSKRKQQA APTANNVDSE VEAEVESPNE KMKKPEESQP 180 PHILCARTED LCFQSSQCTS AIHTVDSHVS KSETMLSPDG SSTLGGSFGQ TSFYGSILPN 240 SRMDSLIGKM ELPGNYDPYL HQDDFMA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	147	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV50576.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099896.1	1e-135	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	6e-83	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2Z7D0A8	0.0	A0A2Z7D0A8_9LAMI; WUSCHEL-related homeobox 8
STRING	Solyc02g082670.2.1	1e-116	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5675	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	9e-68	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]