PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV50822.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family Nin-like
Protein Properties Length: 924aa    MW: 102451 Da    PI: 5.4198
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV50822.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.65.8e-29549599252
      RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                 ek+isl++l+++Fs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++
  KZV50822.1 549 EKHISLSVLQQHFSGSLKDAAKSIGVCPTTLKRICRQHGIPRWPSRKINKV 599
                 799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS006780418IPR019775WD40 repeat, conserved site
PROSITE profilePS5151916.642536619IPR003035RWP-RK domain
PfamPF020423.8E-26552599IPR003035RWP-RK domain
SuperFamilySSF542771.67E-20828917No hitNo description
Gene3DG3DSA:3.10.20.2408.4E-22828910No hitNo description
PROSITE profilePS5174516.897831913IPR000270PB1 domain
SMARTSM006661.4E-16831913IPR000270PB1 domain
PfamPF005646.1E-13832912IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 924 aa     Download sequence    Send to blast
MDGIVAASLD NSLQSWNLED PFGDVSELMR FGSYDGYCDD PGAISNSMYP LNPVPLEGLY  60
GVERGMITMR EADLLFGEVK MMFHSQTVDD VDVRSNSNDA LANLDRAKIP RPPNQSLAEK  120
MIQALLLAKG CSGEGILAQV WIPSKNGDYN VLSTREQPYL LDEKLSGYRD ISRLFTFAAE  180
SSSGSFLGLP GRVFTSMIPE WTSNVLYYSE AEYLRVQHAA DHKVRGSIAL PIFEEDDLEG  240
PCCAVLELVT TKEQPDFNSE MENVCHALKV VNLRSSVPPR LSFQSLSKNQ QLALAEITDV  300
LRSVCHAHRL PLVLTWIPCI YTKESGIETV RVCSAGHDMV PNENYILCVE DTVCYANDRS  360
MQGFVNSCTE HHLVEGQGIA GKALQSNHPV FHPDVKDYHI NEYPLVHHAR KFGLNAAVAI  420
RLRSTHTGNN DYVLEFFLPV DIKGTTEQQL LLDNLSSTMQ RMCKSLRTVS EAELLAPEGD  480
LKVGVRDEDI RVIALSRSIQ QSLENLNSVD RVPQSVFEPK RAEIQANSHN KQVMVEPILQ  540
TEKKRSTVEK HISLSVLQQH FSGSLKDAAK SIGVCPTTLK RICRQHGIPR WPSRKINKVN  600
RSLKKIQSVL DSVQGLEGGL KFDATAGVLV SVRSKIKNND MGKTFPVSSE IISVVQSDSV  660
IQNATPAPLT SKDTKVKVEE DCLVQENWLA EANALYACSV MAECTSKELT QNLDKSRLAS  720
LDTWSSRPAS LSTTPWMTSP NGTTDSFMSK EACDRWEQEF SGVKPKASES KGNIMVDSIF  780
RGAEHSQSSG MTDSSNRSIT MMSGSSSSSG TFGEKTSEKI FEGSCGDSGT KITVKAIYKN  840
DMIRFKFEPA AGCFELHEEV GKRFNLVTGE FQLRYLDDEE EWVMMVNDSD LQECVEMFSV  900
LGTRTVKFSV RDSSSSYMGC FGRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV50822.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073897.10.0protein NLP9
TrEMBLA0A2Z7CUQ40.0A0A2Z7CUQ4_9LAMI; Uncharacterized protein
STRINGXP_009588830.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39812445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.20.0Nin-like family protein