PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV50878.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HD-ZIP
Protein Properties Length: 205aa    MW: 23663.6 Da    PI: 5.4527
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV50878.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox651.1e-201669356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                k ++f++eq+++Le++Fe+++++   ++e+LAk+lgL+ rq+ +WFqN+Ra++k
  KZV50878.1 16 KERRFNDEQIRTLEAVFESESKLEPGKKEKLAKQLGLQPRQIAIWFQNKRARWK 69
                6679*************************************************9 PP
2HD-ZIP_I/II109.32.7e-3516107293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  k rr+++eq+++LE  Fe+e+kLep +K++la++Lglqprq+a+WFqn+RAR+k+k +Ekd+  L + y++l+++ e+L+ke++ L  +l++
   KZV50878.1  16 KERRFNDEQIRTLEAVFESESKLEPGKKEKLAKQLGLQPRQIAIWFQNKRARWKSKTVEKDHGLLLADYKNLSSQFESLKKENQCLLFQLRK 107
                  89**********************************************************************************99988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.2161171IPR001356Homeobox domain
SuperFamilySSF466896.42E-181478IPR009057Homeodomain-like
SMARTSM003892.5E-181475IPR001356Homeobox domain
CDDcd000861.46E-151671No hitNo description
PfamPF000465.6E-181669IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-201876IPR009057Homeodomain-like
PRINTSPR000316.6E-64251IPR000047Helix-turn-helix motif
PROSITE patternPS0002704669IPR017970Homeobox, conserved site
PRINTSPR000316.6E-65167IPR000047Helix-turn-helix motif
PfamPF021836.9E-973111IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MINLEPSNHK KQKSSKERRF NDEQIRTLEA VFESESKLEP GKKEKLAKQL GLQPRQIAIW  60
FQNKRARWKS KTVEKDHGLL LADYKNLSSQ FESLKKENQC LLFQLRKLKN ETAPMNTRNV  120
DSLVKDIPSK YMEGIVSNDE HSSSVEKVVP LGFEEEESYQ FLNSATAEVL DVSSTSSPLE  180
DFGSLESDDM INQVTASTDQ WWFWS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV50878.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093009.14e-51homeobox-leucine zipper protein ATHB-12
SwissprotP468971e-37ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A2Z7CVX31e-148A0A2Z7CVX3_9LAMI; Homeobox-leucine zipper protein ATHB-12
STRINGSolyc01g096320.2.14e-47(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.14e-40homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]