PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV51097.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 218aa    MW: 24098.6 Da    PI: 8.474
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV51097.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.4e-113884354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                ++h+e+ErrRR+riN  f++Lr l+ ++     +K++Ka+ L +++  +k++
  KZV51097.1 38 KSHSEAERRRRERINAHFATLRGLISSN-----EKMDKATLLAEVISEVKQM 84
                58***********************998.....8**********99988886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.5383584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-93884IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-123988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-123992IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-104190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.05E-5125192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MSKVSVKQLL VLDGEKGELV KTSRGNGVRD AKTLAALKSH SEAERRRRER INAHFATLRG  60
LISSNEKMDK ATLLAEVISE VKQMKKTAAC ASEGLHIPMD TDEVKVEECE EDQGSEPKTF  120
SLKASLCSEY RPDLLSDLRR SIDGLPLKLL RAEISTLGGR VKIVFFVAAI EEKPEARDVL  180
MSSVHSALTN ILDKVSASAE YAESFFPRKR PSASYFNS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14348ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV51097.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012830318.11e-78PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y18e-32BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A2Z7CYL01e-156A0A2Z7CYL0_9LAMI; DNA binding protein
STRINGMigut.H01448.1.p5e-78(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67302230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.15e-34bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]