PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV51113.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

HD-ZIP

Protein Properties

Length: 156aa MW: 17882 Da PI: 8.7036

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV51113.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.7	4.1e-18	18	72	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++ ++t+eq+++Le+ F n++++++++ +LA +lg++ rqV++W+qN+Ra+ek+ KZV51113.1 18 NKKRLTQEQVRILETNFTFNNKLDTDRKHQLALELGVPARQVSIWYQNKRAREKN 72 56789************************************************95 PP
2	HD-ZIP_I/II	99	4.3e-32	18	108	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +k+rl++eqv++LE++F+ ++kL+++rK++la eLg+ +rqv +W+qn+RAR k++ lE d++aL+++++++ +en++L+ eve+Lr el KZV51113.1 18 NKKRLTQEQVRILETNFTFNNKLDTDRKHQLALELGVPARQVSIWYQNKRAREKNQSLEADHRALQQHLENVLAENTSLRGEVERLRGELC 108 79*************************************************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.68E-17	10	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.354	13	73	IPR001356	Homeobox domain
SMART	SM00389	3.7E-13	15	77	IPR001356	Homeobox domain
CDD	cd00086	1.82E-12	17	74	No hit	No description
Pfam	PF00046	2.0E-15	18	72	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.9E-17	19	79	IPR009057	Homeodomain-like
PRINTS	PR00031	9.3E-5	44	53	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	48	71	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.3E-5	53	69	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MERSQYSQTQ KQQPLIKNKK RLTQEQVRIL ETNFTFNNKL DTDRKHQLAL ELGVPARQVS 60 IWYQNKRARE KNQSLEADHR ALQQHLENVL AENTSLRGEV ERLRGELCKI QELFSNGFNS 120 SVSSSCDEVG SSKHDLEREY YAALIGAGQF AAFGGL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV51113.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096367.1	7e-59	homeobox-leucine zipper protein ATHB-52-like
TrEMBL	A0A2Z7CWD4	1e-111	A0A2Z7CWD4_9LAMI; Homeobox-leucine zipper protein ATHB-52-like
STRING	XP_009800499.1	4e-48	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2715	24	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	1e-24	homeobox protein 52