PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV51150.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ERF
Protein Properties Length: 246aa    MW: 26382.2 Da    PI: 4.4047
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV51150.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-1853102255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  KZV51150.1  53 VYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDVAALSIKG 102
                 59****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.3E-3953116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-3253111IPR001471AP2/ERF domain
PfamPF008473.4E-1253102IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2153111IPR016177DNA-binding domain
PROSITE profilePS5103223.35453110IPR001471AP2/ERF domain
CDDcd000181.00E-3354112No hitNo description
PRINTSPR003677.5E-115465IPR001471AP2/ERF domain
PRINTSPR003677.5E-117692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MLSADQNCIS SSYSDFSPPD EAALKAEETP ETAKGTKRIR DSDSSDSSKH RQVYRGVRMR  60
SWGKWVSEIR EPRKKSRIWL GTFSTAEMAA RAHDVAALSI KGSSAVLNFP ELAAALPRPV  120
SRSPSDVQAA ALKAAAMDKF DVVSSPTSTC TSSSSITTLS SSSSMSSLVS DADMSAETDE  180
LSEIIELPNL GPCSDAVDLR NDFVYLDNTV VDGGLDSPPP CRGGGCVGDD SDVEISCYFE  240
TLLWNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-19541111573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV51150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081787.15e-76LOW QUALITY PROTEIN: ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD37e-55DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2Z7CVK81e-178A0A2Z7CVK8_9LAMI; Transcriptional factor TINY
STRINGXP_002516502.16e-63(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.18e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]