PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV51255.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

G2-like

Protein Properties

Length: 309aa MW: 34179.9 Da PI: 7.5225

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV51255.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.2	8.9e-34	94	148	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLH+rFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl KZV51255.1 94 KQRLRWTHELHDRFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 148 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.014	91	151	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-32	93	149	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.85E-18	93	148	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.5E-26	94	149	IPR006447	Myb domain, plants
Pfam	PF00249	2.3E-9	96	147	IPR001005	SANT/Myb domain
Pfam	PF14379	2.5E-22	179	225	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MSQTTMPSQG ATSVRCCHVL CLQTVVHPCI ISADPDRAIR LMEELKLMNM HQHKGVPNSS 60 FVYHKPIVQS KSLDCDSGAM DCIGGGNNAS LASKQRLRWT HELHDRFVDA VAQLGGPDRA 120 TPKGVLRVMG VQGLTIYHVK SHLQKYRLAK YLPDSSSDGK KLEKKEGDML SSLDGSSGMQ 180 ITEALKLQME VQKRLQEQLE VQRQLQLRIE AQGKYLKKII EEQQRISGVI LEVPGSGDYY 240 PESDSKTDPT TPGATCESPF PDKPAKEHCT AKSLSRDESF SHQEPLTPDS SCQLSSPVES 300 LGERPIKNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-23	94	151	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-23	94	151	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-23	94	151	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-23	94	151	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-23	94	151	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-23	94	151	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-23	94	151	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-23	94	151	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-23	94	151	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-23	94	151	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-23	94	151	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-23	94	151	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV51255.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020554068.1	1e-135	uncharacterized protein LOC105175200
Swissprot	Q9SJW0	1e-110	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A2Z7CY29	0.0	A0A2Z7CY29_9LAMI; Transcription factor
STRING	XP_006467243.1	1e-131	(Citrus sinensis)
STRING	XP_006449962.1	1e-131	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2796	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	4e-85	G2-like family protein