PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV51262.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

NF-YC

Protein Properties

Length: 255aa MW: 28537.2 Da PI: 5.9359

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV51262.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	173.5	2.2e-54	81	185	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ql+ fw++q ie++ +fknh+lPlarikki+kadedv+misaeaPv+++kace+filelt+r+w+h+eenkrrtl+k+diaaa++rtd+fdflvdi+ KZV51262.1 81 QLQGFWASQmqeIEQTIEFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTMRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDII 179 799**99777899******************************************************************************** PP NF-YC 97 prdelk 102 prdelk KZV51262.1 180 PRDELK 185 *975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	7.49E-35	71	175	IPR009072	Histone-fold
Pfam	PF00808	7.1E-22	103	166	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	3.9E-38	104	181	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MNSSDQQQVP LNQNRKQQLA AVGGVAPSGQ MAYATSYQTT PMVATGTPAT AVSSPTNFPP 60 QQQLGNYHPA QQFHSQQQQQ QLQGFWASQM QEIEQTIEFK NHSLPLARIK KIMKADEDVR 120 MISAEAPVIF AKACEMFILE LTMRAWIHTE ENKRRTLQKN DIAAAISRTD VFDFLVDIIP 180 RDELKEESLG ITKATIPLMG SPADAVPYYY VPQHNPQLDQ AALYGGQPSR PPLSFMAWPQ 240 LHNQQQPPEQ QPGDP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-56	88	181	2	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	159	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV51262.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095726.1	1e-104	nuclear transcription factor Y subunit C-2
Refseq	XP_011095727.1	1e-104	nuclear transcription factor Y subunit C-2
Swissprot	Q8LCG7	4e-77	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	A0A2Z7CVZ4	0.0	A0A2Z7CVZ4_9LAMI; Nuclear transcription factor Y subunit C-2 isoform 1
STRING	XP_008346078.1	1e-100	(Malus domestica)
STRING	XP_008356118.1	1e-100	(Malus domestica)
STRING	XP_008372003.1	1e-100	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3422	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	4e-78	nuclear factor Y, subunit C2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]