PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV51855.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family LBD
Protein Properties Length: 197aa    MW: 21769.9 Da    PI: 9.5356
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV51855.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.21e-36281281101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 aCaaCk++rr+C++dC+lap+fpa+++++f+nv+k FG++n++++lk+lp++++++a++s+v+eA+ ra dPv G+++ + +l+q l+   ael+l+++
  KZV51855.1  28 ACAACKYQRRRCPPDCTLAPHFPADKQNDFRNVRKAFGVKNITRTLKELPPDQHQTAVKSIVFEANLRAVDPVGGCLRKVCELNQSLRICTAELNLVRQ 126
                 7************************************************************************************************99 PP

      DUF260 100 el 101
                 +l
  KZV51855.1 127 QL 128
                 86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.28227128IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3428125IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MNLANNPRNS NAAKFGNTGP GGGAVSQACA ACKYQRRRCP PDCTLAPHFP ADKQNDFRNV  60
RKAFGVKNIT RTLKELPPDQ HQTAVKSIVF EANLRAVDPV GGCLRKVCEL NQSLRICTAE  120
LNLVRQQLAV CRSLVPLKDV KFAKHGNGCN RVIEEHDGEF DGPLGFDHQE LMNFNKKASK  180
NMNTWGLNPI NSCTLIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-25181284111LOB family transfactor Ramosa2.1
5ly0_B1e-25181284111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV51855.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7D0081e-144A0A2Z7D008_9LAMI; LOB domain-containing protein 22-like
STRINGXP_006466020.16e-37(Citrus sinensis)
STRINGGorai.011G064500.12e-37(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1783424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72980.11e-35LOB domain-containing protein 7