PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV51868.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family WRKY
Protein Properties Length: 179aa    MW: 19937.2 Da    PI: 6.1488
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV51868.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.2e-30117175159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDg++WrKYG+K+vk+s++pr+Y++C+ +gCpvkk+ver+++dp++v++tYeg H h+
  KZV51868.1 117 LDDGFKWRKYGKKMVKNSPNPRNYFKCSVEGCPVKKRVERDKDDPHYVVTTYEGIHIHQ 175
                 59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-31104176IPR003657WRKY domain
SuperFamilySSF1182905.89E-27110177IPR003657WRKY domain
PROSITE profilePS5081129.356112177IPR003657WRKY domain
SMARTSM007741.5E-34117176IPR003657WRKY domain
PfamPF031062.7E-23118175IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MANTLPVTQA PGVIFASSGS SLSPETCLGV ADFFEFNDWN IHGIDPALYS FGAEFDHGHL  60
QNPVFTSDDT AVDSTGSSTG SKFHDDGIVN GEYGIGKEEK VIRDRVAFRT KSQIEILDDG  120
FKWRKYGKKM VKNSPNPRNY FKCSVEGCPV KKRVERDKDD PHYVVTTYEG IHIHQGPYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-23107177777Probable WRKY transcription factor 4
2lex_A1e-23107177777Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV51868.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100937.14e-58probable WRKY transcription factor 50
TrEMBLA0A2Z7CYS61e-131A0A2Z7CYS6_9LAMI; Putative WRKY transcription factor 50-like
STRINGMigut.E01579.1.p3e-54(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21242462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.11e-41WRKY DNA-binding protein 50