PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV52373.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

FAR1

Protein Properties

Length: 192aa MW: 22047.4 Da PI: 9.8002

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV52373.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.9	2.6e-26	23	110	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA++vGF vr+ + ++s+ +g++ r++ C+k+g++ + k k +++r++ r gCka++ k+ek+gkw+vt++++eHnH+ KZV52373.1 23 RFYNNYAQRVGFVVRIMQRRRSEVDGRTLARRLGCNKQGFSPNVKGKMGPGKKPRPNVREGCKATILFKMEKSGKWVVTRFVKEHNHP 110 5********************************************9*************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-24	23	110	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MEGSEVVEPY VGMEFESEDD AKRFYNNYAQ RVGFVVRIMQ RRRSEVDGRT LARRLGCNKQ 60 GFSPNVKGKM GPGKKPRPNV REGCKATILF KMEKSGKWVV TRFVKEHNHP SVATAHAYTM 120 VRDKDKKIQE LTQELLRQDQ LCADYRERLL NLLATIEKEA DHLSSRVLSV VESVRKAEAE 180 AFMMSCTDSL KM

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV52373.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089611.1	1e-103	protein FAR1-RELATED SEQUENCE 2
Swissprot	Q9SZL8	9e-23	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2Z7CZ52	1e-141	A0A2Z7CZ52_9LAMI; Uncharacterized protein
STRING	Migut.N00673.1.p	1e-100	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11602	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	3e-60	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]