PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV52698.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ERF
Protein Properties Length: 224aa    MW: 23967.9 Da    PI: 9.8042
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV52698.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-202877255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa++ ++g
  KZV52698.1 28 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAARDFRG 77
                69*******.**********8...557**********************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.7E-142877IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-232887IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-332886IPR001471AP2/ERF domain
CDDcd000181.74E-182887No hitNo description
SMARTSM003807.3E-392891IPR001471AP2/ERF domain
PROSITE profilePS5103223.7882885IPR001471AP2/ERF domain
PRINTSPR003674.4E-112940IPR001471AP2/ERF domain
PRINTSPR003674.4E-115167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MTAPKEKPNA GKVGANGNPK VHAVKEVHFR GVRKRPWGRY AAEIRDPGKK SRVWLGTFDT  60
AEEAARAYDA AARDFRGPKA KTNFPLSSEV RSPSHSSTVE SSSGDLNQRP PVELDLTRRL  120
GAIADTGVPL AGTSPMDGYQ VFRRQPSMAV LPNGQPVLIY EPLGIPAAYR LNPMAVGFRT  180
GAAAAAHSDS DSSSVVDENH LDGSVGKRGL DLDLNLPAPL DAYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-212886261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-212586264ATERF1
3gcc_A5e-212586264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV52698.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100355.13e-79ethylene-responsive transcription factor 4-like
SwissprotQ9LW493e-73ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A2Z7D5Z91e-162A0A2Z7D5Z9_9LAMI; Ethylene-responsive transcription factor 4-like
STRINGMigut.M00159.1.p8e-75(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-27erf domain protein 9