PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV53252.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 227aa    MW: 25651.5 Da    PI: 6.788
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV53252.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.82.5e-0568121854
                 HHHHHHHHHHHH..........HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   8 rErrRRdriNsa..........feeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  E+ RRd++N++          f+eL +++ +    + +K +K+ iL  Av+ + +L
  KZV53252.1  68 KEKMRRDKLNDRqapilshiyiFQELSSIIEPG---RPPKTDKVVILNDAVNMVIQL 121
                 699********9666666666677777777776...89*************998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.33E-867146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-1068143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.76E-669126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEEIPGNWVF DYPLLEDIPV PGGRLPSLDS NFHVEFDNCF GNLDGTESGS RKRMRLGACG  60
ASDSKAFKEK MRRDKLNDRQ APILSHIYIF QELSSIIEPG RPPKTDKVVI LNDAVNMVIQ  120
LRKEAQRLQE SCNKLQDNVK ELKAEKNEIR EEKTKLKAEK DKLEQQLKAL NPPPGFLPHI  180
PPIPPPPQVI SSKMGPFVGY PPFPMWQLMP PTAFDTSEDQ SLRPPVA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV53252.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004232754.16e-83transcription factor ILR3
SwissprotQ9C6821e-60BH115_ARATH; Transcription factor bHLH115
TrEMBLA0A2Z7D1961e-165A0A2Z7D196_9LAMI; Uncharacterized protein
STRINGSolyc02g079970.2.12e-82(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9502482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.11e-58bHLH family protein
Publications ? help Back to Top
  1. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]