PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV53508.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C3H
Protein Properties Length: 317aa    MW: 35773.1 Da    PI: 8.475
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV53508.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH499.6e-16240265126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +ktelC+ +++tG C+yGd+C+FaHg
  KZV53508.1 240 FKTELCNKWQETGACPYGDNCQFAHG 265
                 79***********************8 PP
2zf-CCCH20.96.2e-07278303126
                 --S---SGGGGTS.--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHg 26 
                 ykte Cr  +  G +C+yG rC+F H+
  KZV53508.1 278 YKTEVCRMVLT-GdICPYGHRCHFRHS 303
                 9******9999.55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.1E-19234272IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-11236271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.464239267IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-9239266IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-13240265IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-9273308IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12273306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.404277305IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-6277304IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MQKDNTVYDD FTNSVAGKST VVTSPMNFSL SNPFLSPRST NCLNLNPSYS TLFKNYGSQS  60
LSDAVSVEGA LASANRQMRS SSSILEFQQL YNRHTVCIGQ LHDSIEEVDK LRRENNSLRV  120
RNDDLGRRLA LLTSRDRILS DFNRLNISSP VAASPAAGIA TPRPFIEHNR IEQRSTERES  180
LPKSIAVRSS GYLKINRPGQ ETTRQKSVCQ SSPESQRVYV PGSKNEEESL EFEVYNQGMF  240
KTELCNKWQE TGACPYGDNC QFAHGINELR PVIRHPRYKT EVCRMVLTGD ICPYGHRCHF  300
RHSLTEQERL MAAASPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-23240306470Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV53508.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100111.11e-148zinc finger CCCH domain-containing protein 14
SwissprotQ9C9N38e-73C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2Z7D8C60.0A0A2Z7D8C6_9LAMI; Zinc finger CCCH domain-containing protein 14
STRINGMigut.H00243.1.p1e-125(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77842129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-75C3H family protein