PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV53765.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 248aa    MW: 28632.7 Da    PI: 9.5122
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV53765.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-1273124155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+ +N+ +  Lr+l+P++   ++++ + a+i+  A++++k+L+
  KZV53765.1  73 QRMTHIAVERNRRRLMNEYLTVLRSLMPPS---YAQRGDQASIVGGAINFVKELE 124
                 79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.13E-1671138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.32E-1271128No hitNo description
Gene3DG3DSA:4.10.280.101.6E-1371128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.19972123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-1073124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-878129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MALESVASRP NPFSYDFNIH IESINQETEP TAETLIINPN VDPSAKWDFS PPERPRKRRR  60
SMSLKNREEM EKQRMTHIAV ERNRRRLMNE YLTVLRSLMP PSYAQRGDQA SIVGGAINFV  120
KELEQQVQYL QGRKQLNRKN TSGSLFSEFF IFPQYSNING VADIEVTMVE RHANIKISIS  180
DDRRRPKQLP KMVAALHSIR LTVLHLNLTA VHQSVLYSFS VKVEDECQLS TVNEIATAVY  240
QIIQDIYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15559RKRRR
25560RKRRRS
37384RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV53765.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100183.23e-87LOW QUALITY PROTEIN: transcription factor bHLH96-like
SwissprotQ9C7T41e-67BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1U8AL435e-82A0A1U8AL43_NELNU; transcription factor bHLH94-like
TrEMBLA0A1U8B9D65e-82A0A1U8B9D6_NELNU; transcription factor bHLH96
STRINGXP_010266731.18e-83(Nelumbo nucifera)
STRINGXP_010272971.18e-83(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-70bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]