PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV53769.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ZF-HD
Protein Properties Length: 228aa    MW: 25787.8 Da    PI: 7.7277
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV53769.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.32.9e-313084358
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                 k rYkeClkNhA+ +Gg+avDGCgEfm++ g+egt +alkCaAC CHRnFHR+e++
   KZV53769.1 30 KPRYKECLKNHAVGIGGKAVDGCGEFMAA-GAEGTHDALKCAACSCHRNFHRKETD 84
                 679*************************9.999********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-213285IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.0E-273282IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.0E-283283IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.0123382IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.09E-19152226IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-31158226IPR009057Homeodomain-like
TIGRFAMsTIGR015654.6E-26165222IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MEYEDQADEH EEEIGLPPSP LDAAEPPRRK PRYKECLKNH AVGIGGKAVD GCGEFMAAGA  60
EGTHDALKCA ACSCHRNFHR KETDTLSYLH HHHHHHHHQQ QQLFLTHHPH GHFSYKTPAG  120
YLHVAPPQQT VTPLALPSSS GGGGGGSRDE MEDYYYSNPS GGSAKKRFRT KFTQEQKDKM  180
LDCAERLGWR IQKQDEETVQ QICNEVGIKR HVFKVWMHNN KNTLGKKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-231662231875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV53769.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100018.14e-98zinc-finger homeodomain protein 1-like
SwissprotQ6YXH51e-66ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A2G9HD452e-94A0A2G9HD45_9LAMI; Uncharacterized protein
STRINGXP_008440565.11e-81(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-58homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]