PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV53783.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family AP2
Protein Properties Length: 480aa    MW: 52859.8 Da    PI: 6.4083
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV53783.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.64.8e-11202258155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  +       rk  + g ++ +e+Aa+a++ a++k++g
  KZV53783.1 202 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEEKAARAYDLAALKYWG 258
                 57*******************4444.2344336655.779999**************98 PP
2AP249.97.8e-16301352155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  KZV53783.1 301 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 352
                 57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-8202258IPR001471AP2/ERF domain
CDDcd000181.14E-20202268No hitNo description
SuperFamilySSF541714.58E-15202268IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-12203267IPR001471AP2/ERF domain
SMARTSM003802.1E-22203272IPR001471AP2/ERF domain
PROSITE profilePS5103217.583203266IPR001471AP2/ERF domain
PRINTSPR003672.0E-6204215IPR001471AP2/ERF domain
CDDcd000186.16E-12301362No hitNo description
PfamPF008474.1E-10301352IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18301362IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-18302361IPR001471AP2/ERF domain
PROSITE profilePS5103219.151302360IPR001471AP2/ERF domain
SMARTSM003809.3E-32302366IPR001471AP2/ERF domain
PRINTSPR003672.0E-6342362IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MAPENNWLSF SLQSSVDQML NSSSHSADSH HFYSFSDNNY YANVENHQLV SYMDSSQVQP  60
PPKLEDFFAG DSTETQDSSL THIYDHSHHT GGGASAAAYF FSHGGEQQEL NNITGFQAFS  120
GNSGSEVDDT SFGGQIQSPV ESGNELAAYS QFPFTATTNA LSLGVSSKSN PLGAENNSCK  180
AIVSVDSDST KKISDTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ ARKGRQGGYD  240
KEEKAARAYD LAALKYWGST ATTNFPISNY TKEMDDMKNE TKQEFIASLR RKSSGFSRGA  300
SIYRGVTRHH QQGRWQARIG RVAGNKDLYL GTFATEEEAA EAYDIAAIKF RGVNAVTNFE  360
MSRYNVEAIS KSSLPIGGAA KRLKLSLESE ETQPISNILQ TQSCSSSSSI SFASTPTVSN  420
IPCGIPFDTS VPFYHHNFFQ QLQTSNSVAT DSSARVSSMA TPMPFMSSQP EFFIWPHQSL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00589DAPTransfer from AT5G65510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV53783.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097469.10.0AP2-like ethylene-responsive transcription factor AIL6 isoform X1
SwissprotQ52QU21e-143AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A2G9GKN60.0A0A2G9GKN6_9LAMI; Uncharacterized protein
STRINGXP_009603183.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.11e-138AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]