PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV53864.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ZF-HD
Protein Properties Length: 153aa    MW: 17497.6 Da    PI: 10.0779
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV53864.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer38.82.1e-121282957
  ZF-HD_dimer 29 mpsegeegtaaalkCaACgCHRnFHRrev 57
                 mps geegt  +++CaAC+CHR+FHRr  
   KZV53864.1  1 MPS-GEEGTFGSMRCAACNCHRSFHRRMD 28
                 566.889*******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-6126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152311.076127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.9E-10127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.32E-2076150IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-3176151IPR009057Homeodomain-like
TIGRFAMsTIGR015659.0E-2889146IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MPSGEEGTFG SMRCAACNCH RSFHRRMDAV VDPHRSQTSY GRRNPPAIET HHAEHAPAGP  60
TAESSSEDLH MLQSSPGGHA VASSSRGSKK RFRTKFDQEQ KDRMHEFADK LGWRIQRQDD  120
EIVQQFCSEV GVKRHVFKVW MHNNKQAMKK RQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-23881471675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV53864.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099626.17e-55zinc-finger homeodomain protein 6
SwissprotQ9ZPW76e-40ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A2G9I8I67e-53A0A2G9I8I6_9LAMI; Uncharacterized protein
STRINGEOX910762e-47(Theobroma cacao)
STRINGXP_008392268.11e-47(Malus domestica)
STRINGXP_004512050.11e-47(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.12e-42homeobox protein 24