PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV54134.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family B3
Protein Properties Length: 228aa    MW: 25558.5 Da    PI: 8.8467
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV54134.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.79.9e-14107216196
                 EEEE-..-HHHHTT-EE--HHH.HTT.........---.....--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkke...esktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFk.. 83 
                 f k l++  v++ grl+l+ + a+++             +   ++ tl++ d + r+W++ l+  ++ ++  y+l++ Wk+Fv+ +gL  gD++ F+  
  KZV54134.1 107 FRKSLSSTAVSQDGRLYLSHQEAATIpccpqmtedT---RdsfRKSTLMVFDGQDRQWSMVLTGYNYENQilYTLSGDWKSFVRTHGLSRGDTICFYkn 202
                 789999999****************9***9887662...13345569***************9988888899*************************44 PP

                 E-SS.SEE..EEEE CS
          B3  84 ldgr.sefelvvkv 96 
                 +d r   + ++v++
  KZV54134.1 203 HDPRvAAGYYYVML 216
                 44334455555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.65E-12102222IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-12103219IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-10106218No hitNo description
PROSITE profilePS5086310.926107220IPR003340B3 DNA binding domain
SMARTSM010193.6E-5107220IPR003340B3 DNA binding domain
PfamPF023622.1E-9107217IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MADGRNTDSG GRRTLNLDLN IPYRGAATGS THDATASASD IGTSNDQNEP VSQERKPSNL  60
PLNVLPIKKR RRPDEEPISL ENASQNPAGE QMPGPGSRRL PPEAYCFRKS LSSTAVSQDG  120
RLYLSHQEAA TIPCCPQMTE DTRDSFRKST LMVFDGQDRQ WSMVLTGYNY ENQILYTLSG  180
DWKSFVRTHG LSRGDTICFY KNHDPRVAAG YYYVMLFRKR IVQTTAVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV54134.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7D3E71e-171A0A2Z7D3E7_9LAMI; Uncharacterized protein