PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV54451.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRAS
Protein Properties Length: 474aa    MW: 53695.8 Da    PI: 6.511
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV54451.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS430.91e-131464681374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cA++v+sg+ e+a+  L+ +s+laspdgd+mqR+aayf eALa r++r +++l kal++++ +  ++++e+ ++klf+e +P+lk+s++++N
  KZV54451.1  46 LIHLLVACANHVASGNVENANIGLEYISHLASPDGDTMQRIAAYFSEALADRMLRGWPGLHKALNSTRIA--SVTDEILVQKLFYEYCPFLKLSYVITN 142
                 689*************************************************************999988..5************************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaI+ea+ege+ +HiiD++  q++QW++Llq++ +Rpegpp+lRi g+++    ++e l  ++++L++ Ae+l+vpf+fn+l + +le+l++e+Lrvk+
  KZV54451.1 143 QAIMEAMEGEKVIHIIDLNCFQPVQWISLLQEMRARPEGPPHLRISGIHE----QREVLDIVARKLNEEAEKLDVPFQFNPL-VCKLENLDVEKLRVKT 236
                 **************************************************....9**************************6.778************* PP

        GRAS 199 gEalaVnlvlqlhrll............................................................desvsleserdevLklvkslsPk 237
                 gEa+a+++vlqlh++l                                                            + s     +  ++L+ + +lsPk
  KZV54451.1 237 GEAVAISSVLQLHSILaadddvlwknsplfanspnaahlrrvlqmnqqnlgdfverdgtnvcntspdssssspippAVSP----NMATFLNGLLGLSPK 331
                 ******************************************************************98776644333333....5667*********** PP

        GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                 ++ v+eqe++ n+  F++r++e+l++y+alfd+l++++pr+s er+ +E++l+g+ei+n+va eg +r++rhe+lekW  rl+ aGF+ vpls++++  
  KZV54451.1 332 LMMVTEQESNQNGLMFMDRIMESLNFYAALFDCLDSTMPRASIERRRIEKMLFGEEIKNIVASEGVDRKQRHEKLEKWIPRLDLAGFGMVPLSYHVMLR 430
                 *************************************************************************************************** PP

        GRAS 337 aklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 a++ll+ ++ +gy+++ee+g+++++W+d++L+svSaWr
  KZV54451.1 431 ARRLLHSYNYNGYKIKEENGCFIICWQDQALFSVSAWR 468
                 *************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.68220448IPR005202Transcription factor GRAS
PfamPF035143.5E-12946468IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MIQEEGSSSI CSSPLQKFSM MSFSPSPGSP YPWLREMRSE ERGLCLIHLL VACANHVASG  60
NVENANIGLE YISHLASPDG DTMQRIAAYF SEALADRMLR GWPGLHKALN STRIASVTDE  120
ILVQKLFYEY CPFLKLSYVI TNQAIMEAME GEKVIHIIDL NCFQPVQWIS LLQEMRARPE  180
GPPHLRISGI HEQREVLDIV ARKLNEEAEK LDVPFQFNPL VCKLENLDVE KLRVKTGEAV  240
AISSVLQLHS ILAADDDVLW KNSPLFANSP NAAHLRRVLQ MNQQNLGDFV ERDGTNVCNT  300
SPDSSSSSPI PPAVSPNMAT FLNGLLGLSP KLMMVTEQES NQNGLMFMDR IMESLNFYAA  360
LFDCLDSTMP RASIERRRIE KMLFGEEIKN IVASEGVDRK QRHEKLEKWI PRLDLAGFGM  420
VPLSYHVMLR ARRLLHSYNY NGYKIKEENG CFIICWQDQA LFSVSAWRFR RRSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-66294701380Protein SCARECROW
5b3h_D5e-66294701380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV54451.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002267910.10.0PREDICTED: scarecrow-like protein 3 isoform X1
RefseqXP_010645688.10.0PREDICTED: scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2Z7DBP00.0A0A2Z7DBP0_9LAMI; Scarecrow-like protein 3
STRINGVIT_13s0019g01220.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29142453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]