PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV54520.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRF
Protein Properties Length: 506aa    MW: 55371.5 Da    PI: 7.3272
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV54520.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.62.5e-24196240145
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                 d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e 
  KZV54520.1 196 DPEPGRCRRTDGKKWRCSRDAVTDQKYCERHMNRGRHRSRKPVEG 240
                 79****************************************985 PP
2QLQ61.72e-21129165137
         QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                 s+FT++Q+++L++Q+l+yKy++an+P+P++Ll +i+k
  KZV54520.1 129 SPFTPSQWMELEHQALIYKYILANVPIPSYLLNPIRK 165
                 89*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.8E-13129165IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.607130165IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.8E-15130164IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.432196240IPR014977WRC domain
PfamPF088791.4E-20197239IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MDFGLLGLDN LGCSDTVASG NGAEIKKSKF CGSGFFKRDR ALNEEDFRES KFSQTTSCGE  60
EMLKVPLQIS GNCNFIEGQQ MLSFSSSNSQ NVAFPYFQHT SSSFTRNTGY GSVGMTGASL  120
HGVLSGVRSP FTPSQWMELE HQALIYKYIL ANVPIPSYLL NPIRKALESA GFSAFSGLRS  180
DAVGWGAFYL GFPNTDPEPG RCRRTDGKKW RCSRDAVTDQ KYCERHMNRG RHRSRKPVEG  240
QSGHSASGIT NTIVKPTPIT SSASASVVPA GGVSNSLSLS HRQLNYQQDD VSDANRSLPN  300
MDNVGGVYQH TILSMASSGK GPQENQYSIS KQLRAYDCES YNREFGLVNC DSLINPVSKS  360
STDDRQHSFR QLMDEWPKNK SAESDPHPDT TQLSISIPIT FLPQSSSTTE KLETSPTTLS  420
TQHQGFEKNH WTPLSWEPSV GGPLGEVLHN TNNTTMDKAL NLMEGCDNSS QLTSSPTGVL  480
QRGSLSNSST LSSPRAETVM INLFQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV54520.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074333.20.0growth-regulating factor 6
TrEMBLA0A2Z7D5V20.0A0A2Z7D5V2_9LAMI; Growth-regulating factor 1
STRINGVIT_18s0001g08650.t011e-150(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-70growth-regulating factor 1