PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV54540.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 347aa    MW: 38896.2 Da    PI: 5.4683
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV54540.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.4e-102663061055
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 rrRR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  KZV54540.1 266 RRRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 306
                 9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.059256305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-13256314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-12261314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-12262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-8266306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
METLSKLFSC EDSIDQFLLH FNVTDIFSNN GQIPSNLLVD QLSDEALFFT NDTNLIQDSS  60
NSSEIGSALS LKQSGHEFYN SGDFHQDGIT SSTVDTYAMG YKIVPAFTDY MMEEILQLKS  120
QTCNDQVGGA AIQDTLNGES CEEMQLKREY QRSQVQIIHQ SGVDKFEDNP PKSPRKRSRV  180
SKDAQKNKKN TQSKKKKKAD QNNNDVEEEN INGAVNGQSS SSCCSEDDSN VSQDLNEGSN  240
SEAKTSKGKA RASRGSATDP QSLYARRRRE RINERLRILQ NLVPNGTKVD ISTMLEEAVH  300
YVKFLQLQIK SVASLHVHSE ESSKFYNIEI GILEILYRMI GAILHLK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174196RKRSRVSKDAQKNKKNTQSKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV54540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074590.15e-74transcription factor bHLH85-like
TrEMBLA0A2Z7D5X20.0A0A2Z7D5X2_9LAMI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.16e-25ROOT HAIR DEFECTIVE 6-LIKE 2