PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV54542.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

LBD

Protein Properties

Length: 186aa MW: 20019.8 Da PI: 8.2847

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV54542.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.4	1.5e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlrr+C+++Cvl++++ p++q++++ +v k+FG+s ++++++a+p+++r+++++sl++eA+ r +Pv+Gavg++++++++++++++e+ KZV54542.1 2 SCNGCRVLRRGCSDQCVLRQCLdwietPQAQANATLFVSKFFGRSDLMSFISAVPPHRRPALFQSLLFEACSRSVNPVNGAVGLLSTGNWHICEAAVET 100 6***********************************************************************************************998 PP DUF260 95 all 97 +l KZV54542.1 101 VLS 103 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.815	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.3E-27	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MSCNGCRVLR RGCSDQCVLR QCLDWIETPQ AQANATLFVS KFFGRSDLMS FISAVPPHRR 60 PALFQSLLFE ACSRSVNPVN GAVGLLSTGN WHICEAAVET VLSGGSLRPF PAGILPSKPD 120 EELGSKFLVH GNNGIYYTDY PPGGGSGENS TSFGSGLSEI SPEIGRAKKV KKNVGNKEPK 180 LLNLFE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV54542.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074366.2	4e-76	LOW QUALITY PROTEIN: LOB domain-containing protein 38-like
Swissprot	Q9FN11	1e-57	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A2Z7D4K3	1e-134	A0A2Z7D4K3_9LAMI; LOB domain-containing protein 38-like
STRING	XP_009606111.1	1e-64	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	5e-60	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]