PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV54559.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family WRKY
Protein Properties Length: 326aa    MW: 35783 Da    PI: 10.2091
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV54559.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.31.2e-31255312359
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dpk++++tYegeHnh 
  KZV54559.1 255 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAFDDPKMLIVTYEGEHNHA 312
                 99************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.1E-15204251IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.6E-33242312IPR003657WRKY domain
PROSITE profilePS5081131.284248314IPR003657WRKY domain
SuperFamilySSF1182904.97E-27250312IPR003657WRKY domain
SMARTSM007747.8E-38253313IPR003657WRKY domain
PfamPF031063.1E-27255311IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAVDLMPGFT FTAKMEENAA REAAAAGLQS VDKLMRILSN SKSFHPEPIP AVDCRAVADV  60
AVNKFKKFIT LLDRTRTGHA RFRRGPVPDN KKIEPVLESV GPSPQDQKAL ENASSTKIYC  120
PTPVQRLPPL PLPNHFQKLA RNGSFERKET STTINFSSPV TSFMSTLTGD TDSLQPSMCS  180
GFQITNLSQV SSTGRPPLST SSFKRKCSSM DDSNGKCGGG STGSRCHCPK KKKSKLKRVV  240
RIPAISMKMA DIPPDDYSWR KYGQKPIKGS PHPRGYYKCS SVRGCPARKH VERAFDDPKM  300
LIVTYEGEHN HAHSTTEAPA LVLESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22241311271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV54559.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074403.11e-175probable WRKY transcription factor 7
SwissprotQ9STX02e-96WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A2Z7D7M40.0A0A2Z7D7M4_9LAMI; Putative WRKY transcription factor 7
STRINGSolyc04g078550.2.11e-155(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-79WRKY DNA-binding protein 7