PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV54563.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ERF
Protein Properties Length: 145aa    MW: 16377.5 Da    PI: 10.3624
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV54563.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.6e-182877255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ykG+r +k +g+WvAeIr+p   +kr r++lg++ ++e Aa+a++ a  +l+g
  KZV54563.1 28 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPEAAARAYDTAVFYLRG 77
                69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.7E-362891IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-212886IPR016177DNA-binding domain
PROSITE profilePS5103222.6032885IPR001471AP2/ERF domain
CDDcd000185.70E-262986No hitNo description
PRINTSPR003672.7E-112940IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-302986IPR001471AP2/ERF domain
PfamPF008476.1E-122977IPR001471AP2/ERF domain
PRINTSPR003672.7E-116787IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MDGALCIKSS TSSSTTENKR RQRQQDKPYK GIRMRKWGKW VAEIREPNKR SRIWLGSYSS  60
PEAAARAYDT AVFYLRGPSA RLNFPEFIAT DTEVTRDMSA AAIRKKAAEV GARVDALQSA  120
GHARTESRRV IEKPDLNEYP SLEDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-162585263ATERF1
3gcc_A8e-162585263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00020PBMTransfer from AT4G36900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV54563.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074400.18e-70ethylene-responsive transcription factor ERF008-like
SwissprotQ9SW638e-52RA210_ARATH; Ethylene-responsive transcription factor RAP2-10
TrEMBLA0A2Z7D4X11e-102A0A2Z7D4X1_9LAMI; Uncharacterized protein
STRINGSolyc04g078640.1.19e-64(Solanum lycopersicum)
STRINGPGSC0003DMT4000205251e-63(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36900.11e-53related to AP2 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]