PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV54583.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 228aa    MW: 25786.8 Da    PI: 8.5933
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV54583.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.3e-183782147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd++l ++v ++G ++W++I++++  gR++k+c++rw + 
       KZV54583.1 37 KGPWSAEEDKILTRLVDRYGARNWSLISKYIK-GRSGKSCRLRWCNQ 82
                     79*****************************9.***********985 PP
2Myb_DNA-binding55.71.2e-1791133347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++ Ede ++ a+ ++G++ W+tIar ++ gRt++ +k++w++ 
       KZV54583.1  91 PFSPMEDETILAAHDKYGNR-WATIARLLP-GRTDNAVKNHWNST 133
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.5943287IPR017930Myb domain
SuperFamilySSF466891.69E-3135130IPR009057Homeodomain-like
SMARTSM007179.3E-163685IPR001005SANT/Myb domain
PfamPF002498.6E-183782IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-243890IPR009057Homeodomain-like
CDDcd001672.86E-143981No hitNo description
SMARTSM007172.7E-1588136IPR001005SANT/Myb domain
PROSITE profilePS5129419.98889138IPR017930Myb domain
PfamPF002491.9E-1491133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-2391137IPR009057Homeodomain-like
CDDcd001671.00E-1191134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MERYSRCSST SSSSSDSSSD SCGTKTLPDG DKSERIKGPW SAEEDKILTR LVDRYGARNW  60
SLISKYIKGR SGKSCRLRWC NQLSPDVEHR PFSPMEDETI LAAHDKYGNR WATIARLLPG  120
RTDNAVKNHW NSTLKRRYLQ KQKQSVDEPK DIERNMGSAS YDFHEYDPMT ALSLAPPGMG  180
GSGMAENRAE MESMPAGFWD VMRNVIAKEV REYVSSSFPE AANSSRFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-40361376107B-MYB
1gv2_A2e-40341371104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV54583.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083803.11e-109transcription factor MYB44-like
TrEMBLA0A2Z7D4Z11e-169A0A2Z7D4Z1_9LAMI; Uncharacterized protein
STRINGXP_009620130.11e-92(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79502131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.13e-57myb domain protein 77